RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SRMP19623 302 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 LGALS3BPQ08380 585 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 KIR2DS3Q14952 304 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 KIR2DS5Q14953 304 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 PON3Q15166 354 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 MTFR2Q6P444 385 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 LINGO2Q7L985 606 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 COMMD7Q86VX2 200 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 SLC35F2Q8IXU6 374 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 ARL14Q8N4G2 192 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 CAMKVQ8NCB2 501 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 FAM71CQ8NEG0 241 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 OR4K13Q8NH42 304 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 OR14A16Q8NHC5 309 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 CNOT9Q92600 299 aaKnown RBP12.1□□□□□ -0.47
VPS4A-204ENST00000566354 PIGKQ92643 395 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 TTTY10Q9BZA0 68 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 TRIM2Q9C040 744 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 METTL17Q9H7H0 456 aaPredicted RBP12.1□□□□□ -0.47
VPS4A-204ENST00000566354 IL21RQ9HBE5 538 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 NKIRAS2Q9NYR9 191 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 GNG8Q9UK08 70 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 SPACA6W5XKT8 324 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 GPR179Q6PRD1 2367 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 ASXL3Q9C0F0 2248 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 GABARAPH6UMI1 98 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 PDCD5O14737 125 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 FGF17O60258 216 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 CTSVO60911 334 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 NDUFB2O95178 105 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 GPR75O95800 540 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 IFI6P09912 130 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 HIST1H1CP16403 213 aaKnown RBP12.09□□□□□ -0.47
VPS4A-204ENST00000566354 C4BPBP20851 252 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 EDNRAP25101 427 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 AVPR2P30518 371 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 HHEXQ03014 270 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 PRICKLE4Q2TBC4 344 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 ALG10BQ5I7T1 473 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 ELFN2Q5R3F8 820 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 SFRP4Q6FHJ7 346 aaPredicted RBP12.09□□□□□ -0.47
VPS4A-204ENST00000566354 NLRC3Q7RTR2 1065 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 GKN2Q86XP6 184 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 IZUMO1Q8IYV9 350 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 SDR9C7Q8NEX9 313 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 OR10G6Q8NH81 332 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 RBP7Q96R05 134 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 SMAD5Q99717 465 aaKnown RBP12.09□□□□□ -0.47
VPS4A-204ENST00000566354 BEX1Q9HBH7 125 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 HRASLSQ9HDD0 168 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 ZC4H2Q9NQZ6 224 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 MAB21L2Q9Y586 359 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 ADAMTS9Q9P2N4 1935 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 A0A1B0GUH1 482 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 IFITM5A6NNB3 132 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 GMDSO60547 372 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 SNAPC5O75971 98 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 NGFRP08138 427 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 RRASP10301 218 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 DIO1P49895 249 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 VSX2P58304 361 aaPredicted RBP12.09□□□□□ -0.47
VPS4A-204ENST00000566354 CRYZQ08257 329 aaKnown RBP12.09□□□□□ -0.47
VPS4A-204ENST00000566354 EXOSC7Q15024 291 aaKnown RBP12.09□□□□□ -0.47
VPS4A-204ENST00000566354 LPAL2Q16609 132 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 FAM199XQ6PEV8 388 aaPredicted RBP12.09□□□□□ -0.47
VPS4A-204ENST00000566354 UXS1Q8NBZ7 420 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 FLVCR1-AS1Q8TAF5 88 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 PTCHD1Q96NR3 888 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 DERL3Q96Q80 235 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 PDCD1LG2Q9BQ51 273 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 GSX2Q9BZM3 304 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 KLHL9Q9P2J3 617 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 RCE1Q9Y256 329 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 FKBP7Q9Y680 259 aa12.09□□□□□ -0.47
VPS4A-204ENST00000566354 CACNA1HO95180 2353 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 TMEM238LA0A1B0GVL6 79 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 OR6C74A6NCV1 312 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF860A6NHJ4 632 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 LMO7DNF2Z398 122 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 G3V3Q6 166 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 M0R233 179 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 AIPO00170 330 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 NKX2-2O95096 273 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 NAA10P41227 235 aaPredicted RBP12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ACAA2P42765 397 aaKnown RBP12.08□□□□□ -0.48
VPS4A-204ENST00000566354 SELENOPP49908 381 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 MGAT2Q10469 447 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 LINC00114Q6XXX2 140 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 BEND4Q6ZU67 534 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 RHOUQ7L0Q8 258 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ZAR1Q86SH2 424 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 OR6V1Q8N148 313 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 FTMTQ8N4E7 242 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 OR51L1Q8NGJ5 315 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ARSGQ96EG1 525 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 LCORQ96JN0 433 aaPredicted RBP12.08□□□□□ -0.48
VPS4A-204ENST00000566354 NOX4Q9NPH5 578 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 NPDC1Q9NQX5 325 aaPredicted RBP12.08□□□□□ -0.48
VPS4A-204ENST00000566354 NCDNQ9UBB6 729 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 FLVCR2Q9UPI3 526 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms