RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 HTR2AP28223 471 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 PRKAR1BP31321 381 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 TMEM33P57088 247 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 LMO4P61968 165 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 HOXC5Q00444 222 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 MFSD13AQ14CX5 517 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 RGNQ15493 299 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 KRT71Q3SY84 523 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 FAM91A1Q658Y4 838 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 CLDND2Q8NHS1 167 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 DNAJA4Q8WW22 397 aaPredicted RBP14.12□□□□□ -0.15
CLN3-208ENST00000561505 GTF2H4Q92759 462 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 PLA2G12AQ9BZM1 189 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 DYNLRB1Q9NP97 96 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 KLHL14Q9P2G3 628 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 REV1Q9UBZ9 1251 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 MEGF8Q7Z7M0 2845 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 TRAV36DV7A0A075B6V5 113 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 A0A1B0GWA3 101 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 SH3PXD2BA1X283 911 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 M0R233 179 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 RGS16O15492 202 aaPredicted RBP14.11□□□□□ -0.15
CLN3-208ENST00000561505 AKAP8O43823 692 aaKnown RBP14.11□□□□□ -0.15
CLN3-208ENST00000561505 TFP02787 698 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 HPXP02790 462 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 NUDT7P0C024 238 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 COL8A2P25067 703 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 MRPL19P49406 292 aaKnown RBP14.11□□□□□ -0.15
CLN3-208ENST00000561505 ARFIP2P53365 341 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 NPRL3Q12980 569 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 FADDQ13158 208 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 C1DQ13901 141 aaKnown RBP14.11□□□□□ -0.15
CLN3-208ENST00000561505 GSG1Q2KHT4 349 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 ATG16L1Q676U5 607 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 KRT80Q6KB66 452 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 DHRS4L2Q6PKH6 230 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 USP43Q70EL4 1123 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 GLCCI1Q86VQ1 547 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 COMTD1Q86VU5 262 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 CARM1Q86X55 608 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 WDFY1Q8IWB7 410 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 SCAIQ8N9R8 606 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 BBS10Q8TAM1 723 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 RDH5Q92781 318 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 TMEM186Q96B77 213 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 MS4A3Q96HJ5 214 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 ITCHQ96J02 903 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 PAIP1Q9H074 479 aaKnown RBP14.11□□□□□ -0.15
CLN3-208ENST00000561505 ZNF385DQ9H6B1 395 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 THAP1Q9NVV9 213 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 CORINQ9Y5Q5 1042 aa14.11□□□□□ -0.15
CLN3-208ENST00000561505 A0A087WUJ7 227 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 TMEM89A2RUT3 159 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 FAM157AC9JC47 383 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 RP2O75695 350 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 HLA-HP01893 362 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 BGLAPP02818 100 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 HLA-DOBP13765 273 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 WDR4P57081 412 aaKnown RBP14.1□□□□□ -0.15
CLN3-208ENST00000561505 IL1RL1Q01638 556 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 REP15Q6BDI9 236 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 ULK3Q6PHR2 472 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 TPK1Q9H3S4 243 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 RMND5AQ9H871 391 aa14.1□□□□□ -0.15
CLN3-208ENST00000561505 MGAM2Q2M2H8 2515 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 TMEM247A6NEH6 219 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 M0R3G1 203 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 MSMBP08118 114 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 GTF2E2P29084 291 aaKnown RBP14.09□□□□□ -0.15
CLN3-208ENST00000561505 C12orf54Q6X4T0 127 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 C1orf229Q6ZS94 237 aaPredicted RBP14.09□□□□□ -0.15
CLN3-208ENST00000561505 PXKQ7Z7A4 578 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 LRP11Q86VZ4 500 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 UEVLDQ8IX04 471 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 MAL2Q969L2 176 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 YIPF5Q969M3 257 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 RAD21L1Q9H4I0 556 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 HIF1ANQ9NWT6 349 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 MRPL39Q9NYK5 338 aaKnown RBP14.09□□□□□ -0.15
CLN3-208ENST00000561505 FBXL3Q9UKT7 428 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 NOX1Q9Y5S8 564 aa14.09□□□□□ -0.15
CLN3-208ENST00000561505 IGLV3-9A0A075B6K5 115 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 A0A0B4J2E0 115 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 A0A1B0GX12 115 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 CLIC1O00299 241 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 WNT9BO14905 357 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 WIPF1O43516 503 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 TPST2O60704 377 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 SEC14L2O76054 403 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 ANP32DO95626 131 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 GAAP10253 952 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 ARAFP10398 606 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 GPR6P46095 362 aaPredicted RBP14.08□□□□□ -0.16
CLN3-208ENST00000561505 POLR2JP52435 117 aaKnown RBP14.08□□□□□ -0.16
CLN3-208ENST00000561505 SEC24CP53992 1094 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 SLC18A1P54219 525 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 RPS23P62266 143 aaKnown RBP14.08□□□□□ -0.16
CLN3-208ENST00000561505 RAB1AP62820 205 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 CCNIQ14094 377 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 TRMT5Q32P41 509 aaKnown RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms