RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 IFT27Q9BW83 186 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 TSSK6Q9BXA6 273 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 GRIP2Q9C0E4 1043 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 SLC6A15Q9H2J7 730 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 ZNF703Q9H7S9 590 aaPredicted RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 ACKR4Q9NPB9 350 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 C20orf141Q9NUB4 165 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 PAQR5Q9NXK6 330 aaPredicted RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 IL20Q9NYY1 176 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 TRAPPC4Q9Y296 219 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 HSPE1-MOB4S4R3N1 261 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 FBN3Q75N90 2809 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 HRNRQ86YZ3 2850 aaPredicted RBP10.53□□□□□ -0.72
LDLR-212ENST00000560467 LRRC3CA6NJW4 275 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 C17orf51A8MQB3 221 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 IDH3BO43837 385 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 SOX14O95416 240 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 ACTL6AO96019 429 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 MAKP20794 623 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 BMP5P22003 454 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 AHCYP23526 432 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 SFTPDP35247 375 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 CARD18P57730 90 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 CSNK2BP67870 215 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 MYBPC1Q00872 1141 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 SF3B4Q15427 424 aaKnown RBP eCLIP10.53□□□□□ -0.723e-8■■■□□ 14.8
LDLR-212ENST00000560467 OR7A5Q15622 319 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 SGCBQ16585 318 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 WIPI1Q5MNZ9 446 aaPredicted RBP10.53□□□□□ -0.72
LDLR-212ENST00000560467 TMEM225Q6GV28 225 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 DPY19L2P2Q6ZN68 376 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 ZNF620Q6ZNG0 422 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 ESPNLQ6ZVH7 1005 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 PTCHD4Q6ZW05 846 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 H1FNTQ75WM6 255 aaPredicted RBP10.53□□□□□ -0.72
LDLR-212ENST00000560467 THAP5Q7Z6K1 395 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 SCAIQ8N9R8 606 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 OR13C2Q8NGS9 318 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 OR5J2Q8NH18 312 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 LIPHQ8WWY8 451 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 TAAR8Q969N4 342 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 HRASLS5Q96KN8 279 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 TNFRSF13CQ96RJ3 184 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 ANKRD60Q9BZ19 345 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 OR11A1Q9GZK7 315 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 UBQLN3Q9H347 655 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 TMEM185BQ9H7F4 350 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 H2AFY2Q9P0M6 372 aaPredicted RBP10.53□□□□□ -0.72
LDLR-212ENST00000560467 B3GALT5Q9Y2C3 310 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 SLC6A5Q9Y345 797 aa10.53□□□□□ -0.72
LDLR-212ENST00000560467 FN1P02751 2386 aaKnown RBP10.52□□□□□ -0.73
LDLR-212ENST00000560467 IGKV1D-42A0A075B6H8 117 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 A0A1W2PRG6 482 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 RIIAD1A6NNX1 92 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 SHISA8B8ZZ34 492 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 SEC14L5O43304 696 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 KLF4O43474 513 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 RNF13O43567 381 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 DNPH1O43598 174 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 ATE1O95260 518 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 SYNGR4O95473 234 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 ADORA3P0DMS8 318 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 GABRA1P14867 456 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 FOSL1P15407 271 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 PAICSP22234 425 aaKnown RBP10.52□□□□□ -0.73
LDLR-212ENST00000560467 GGT2P36268 569 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 ASCL1P50553 236 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 ADARB1P78563 741 aaKnown RBP10.52□□□□□ -0.73
LDLR-212ENST00000560467 LTBQ06643 244 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 C1DQ13901 141 aaKnown RBP10.52□□□□□ -0.73
LDLR-212ENST00000560467 SNAPC1Q16533 368 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 BCL2A1Q16548 175 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 TMEM44Q2T9K0 475 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 ALG10Q5BKT4 473 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 CLEC12AQ5QGZ9 265 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 TMPPEQ6ZT21 453 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 HDDC2Q7Z4H3 204 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 MEX3DQ86XN8 651 aaKnown RBP10.52□□□□□ -0.73
LDLR-212ENST00000560467 FAM81AQ8TBF8 368 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 POC1BQ8TC44 478 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 FAM222BQ8WU58 562 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 RNASE6Q93091 150 aaKnown RBP10.52□□□□□ -0.73
LDLR-212ENST00000560467 ABTB1Q969K4 478 aaPredicted RBP10.52□□□□□ -0.73
LDLR-212ENST00000560467 MBD6Q96DN6 1003 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 SAMD8Q96LT4 415 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 KLHL15Q96M94 604 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 MBOAT4Q96T53 435 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 OR52D1Q9H346 318 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 EGLN3Q9H6Z9 239 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 CLN6Q9NWW5 311 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 MRPL39Q9NYK5 338 aaKnown RBP10.52□□□□□ -0.73
LDLR-212ENST00000560467 GRHPRQ9UBQ7 328 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 BLOC1S6Q9UL45 172 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 NDRG4Q9ULP0 352 aaKnown RBP10.52□□□□□ -0.73
LDLR-212ENST00000560467 NSD1Q96L73 2696 aaPredicted RBP10.52□□□□□ -0.73
LDLR-212ENST00000560467 VPS13CQ709C8 3753 aa10.52□□□□□ -0.73
LDLR-212ENST00000560467 PHF3Q92576 2039 aaKnown RBP10.51□□□□□ -0.73
LDLR-212ENST00000560467 TRAV27A0A087WT01 109 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 LIPT2A6NK58 231 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 ZAR1LA6NP61 321 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms