RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TXNDC12O95881 172 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 BCL10O95999 233 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 PDGFAP04085 211 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 HIST1H1CP16403 213 aaKnown RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 ZNF3P17036 446 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 POU3F2P20265 443 aaPredicted RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 SDHAP31040 664 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 STARP49675 285 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 BMXP51813 675 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 CLDN20P56880 219 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 CSNK2A1P68400 391 aaPredicted RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 PUDPQ08623 228 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 ITGADQ13349 1161 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 SLC10A1Q14973 349 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 MS4A18Q3C1V0 323 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 RNFT1Q5M7Z0 435 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 AADACL4Q5VUY2 407 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 CXXC5Q7LFL8 322 aaKnown RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 GGNQ86UU5 652 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 CPOQ8IVL8 374 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 KDM8Q8N371 416 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 TMEM99Q8N816 258 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 ADPRHL1Q8NDY3 354 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 ANKK1Q8NFD2 765 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 OR52E2Q8NGJ4 325 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 OR4K13Q8NH42 304 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 SGCDQ92629 289 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 RASD2Q96D21 266 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 Q96M85 177 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 TSPAN32Q96QS1 320 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 RHNO1Q9BSD3 238 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 SLC6A15Q9H2J7 730 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 HMG20AQ9NP66 347 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 ACKR4Q9NPB9 350 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 HINT3Q9NQE9 182 aaKnown RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 PAK1IP1Q9NWT1 392 aaPredicted RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 GRHPRQ9UBQ7 328 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 PSORS1C1Q9UIG5 152 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 KLHL21Q9UJP4 597 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 ZNF346Q9UL40 294 aaKnown RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 PCDHGB7Q9Y5F8 929 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 A0A087WV48 116 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 FAM183AA6NL82 134 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 SNTNA6NMZ2 147 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 CLCA1A8K7I4 914 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 PRR23D1E9PI22 279 aaPredicted RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 H0YC42 278 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 K7EM74 188 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 EIF1AYO14602 144 aaKnown RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 TNFSF11O14788 317 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 SLC22A1O15245 554 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 PRODHO43272 600 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 SEC14L5O43304 696 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 SERPINI2O75830 405 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 ATE1O95260 518 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 PLGP00747 810 aaPredicted RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 PRR23D2P0DMB1 279 aaPredicted RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 ACVR2AP27037 513 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 SLC35A2P78381 396 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 PMP22Q01453 160 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.06□□□□□ -0.8
USP3-218ENST00000560202 NFATC3Q12968 1075 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 CRMP1Q14194 572 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 ZNF169Q14929 603 aaPredicted RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 ZNF239Q16600 458 aaKnown RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 EMC4Q5J8M3 183 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 NXNL2Q5VZ03 156 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 GPR139Q6DWJ6 353 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 PLBD1Q6P4A8 553 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 PAQR6Q6TCH4 344 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 UNQ6494/PRO21346Q6UXR6 183 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 Q6ZS92 163 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 ESPNLQ6ZVH7 1005 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 UBQLNLQ8IYU4 475 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 SLC37A3Q8NCC5 494 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 LSM14AQ8ND56 463 aaKnown RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 SDR9C7Q8NEX9 313 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 IPCEF1Q8WWN9 437 aaPredicted RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 GGHQ92820 318 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 OTULINQ96BN8 352 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 DEFB127Q9H1M4 99 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 FANCFQ9NPI8 374 aa10.06□□□□□ -0.8
USP3-218ENST00000560202 RPL36Q9Y3U8 105 aaKnown RBP10.06□□□□□ -0.8
USP3-218ENST00000560202 DMXL2Q8TDJ6 3036 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 LAMA5O15230 3695 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 A0A1W2PNV4 684 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 A0A1W2PRG6 482 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 CLDN25C9JDP6 229 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 TAF4O00268 1085 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 EIF1BO60739 113 aaKnown RBP10.05□□□□□ -0.8
USP3-218ENST00000560202 IGHMP01871 453 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 DBTP11182 482 aaKnown RBP10.05□□□□□ -0.8
USP3-218ENST00000560202 HLA-DOBP13765 273 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 PAICSP22234 425 aaKnown RBP10.05□□□□□ -0.8
USP3-218ENST00000560202 SLC15A1P46059 708 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 P2RY4P51582 365 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 SUCLG1P53597 346 aaKnown RBP10.05□□□□□ -0.8
USP3-218ENST00000560202 CXADRP78310 365 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 H3F3AP84243 136 aa10.05□□□□□ -0.8
USP3-218ENST00000560202 ZNF91Q05481 1191 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms