RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 OR2M2Q96R28 347 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 CADM1Q9BY67 442 aaKnown RBP11.98□□□□□ -0.49
SHMT2-228ENST00000557302 LINC00470Q9BZP3 86 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 MAGIXQ9H6Y5 334 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 MED29Q9NX70 200 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 TAS2R5Q9NYW4 299 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 TMEM5Q9Y2B1 443 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 FBN2P35556 2912 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 CACNA1DQ01668 2161 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 TRBV4-1A0A0J9YWV2 114 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 AQP12BA6NM10 295 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 ZNF726A6NNF4 738 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 EFCAB9A8MZ26 197 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 PDLIM1O00151 329 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 UPK3AO75631 287 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 GADD45GO95257 159 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 THBDP07204 575 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 ITGA5P08648 1049 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 IFNGR1P15260 489 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 MAKP20794 623 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 CRYGSP22914 178 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 MPGP29372 298 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 MAGEA2P43356 314 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 FOXG1P55316 489 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-228ENST00000557302 TGFBR3Q03167 851 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 RPL18Q07020 188 aaKnown RBP11.97□□□□□ -0.49
SHMT2-228ENST00000557302 FLOT2Q14254 428 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 STK11Q15831 433 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 C9orf135Q5VTT2 229 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 FBXW10Q5XX13 1052 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 NHLRC1Q6VVB1 395 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 C22orf34Q6ZV56 151 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 SLC35D2Q76EJ3 337 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 AQP12AQ8IXF9 295 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 GPR137CQ8N3F9 429 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 HSD17B8Q92506 261 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 TXNDC15Q96J42 360 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 ADAD1Q96M93 576 aaKnown RBP11.97□□□□□ -0.49
SHMT2-228ENST00000557302 ALKBH3Q96Q83 286 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-228ENST00000557302 EMC6Q9BV81 110 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 KRCC1Q9NPI7 259 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-228ENST00000557302 APCP25054 2843 aa11.97□□□□□ -0.49
SHMT2-228ENST00000557302 TACC2O95359 2948 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 A0A1W2PRG6 482 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 SLC35F4A4IF30 521 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 CTAG2O75638 210 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 RAD51DO75771 328 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 RRM2P31350 389 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 AQP2P41181 271 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 GPR4P46093 362 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 SLC9A3P48764 834 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 BIDP55957 195 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 CBX1P83916 185 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 LGALS3BPQ08380 585 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 TAB1Q15750 504 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 ANKDD1AQ495B1 522 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 CARD17Q5XLA6 110 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 OR7E24Q6IFN5 339 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 ALKBH2Q6NS38 261 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 HMBOX1Q6NT76 420 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 CCDC121Q6ZUS5 278 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 TMPRSS11FQ6ZWK6 438 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 P2RY8Q86VZ1 359 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 MEX3DQ86XN8 651 aaKnown RBP11.96□□□□□ -0.49
SHMT2-228ENST00000557302 WFDC8Q8IUA0 241 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 TMEM123Q8N131 208 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 C1orf162Q8NEQ5 155 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-228ENST00000557302 OR4K5Q8NGD3 323 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 MOSPD2Q8NHP6 518 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 LRMDAQ9H2I8 198 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 INIPQ9NRY2 104 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 RASSF1Q9NS23 344 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 TMCC3Q9ULS5 477 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 POMPQ9Y244 141 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 HIF3AQ9Y2N7 669 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 ABCA4P78363 2273 aa11.96□□□□□ -0.49
SHMT2-228ENST00000557302 TRAV27A0A087WT01 109 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 SH3PXD2BA1X283 911 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 FAM221AA4D161 298 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 OR5H1A6NKK0 313 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 CLOCKO15516 846 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 KRT36O76013 467 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 BCL10O95999 233 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 F13BP05160 661 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 TSPAN19P0C672 248 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 RAP2AP10114 183 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 DAP3P51398 398 aaKnown RBP11.95□□□□□ -0.5
SHMT2-228ENST00000557302 RPS4XP62701 263 aaKnown RBP11.95□□□□□ -0.5
SHMT2-228ENST00000557302 ROR2Q01974 943 aaKnown RBP11.95□□□□□ -0.5
SHMT2-228ENST00000557302 SEC23BQ15437 767 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 GABRA6Q16445 453 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 ALG10Q5BKT4 473 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 TIMM23BQ5SRD1 257 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 SSX8Q7RTT4 187 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 HDDC2Q7Z4H3 204 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 OAFQ86UD1 273 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 SPATA24Q86W54 205 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 C20orf196Q8IYI0 205 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 OR13C2Q8NGS9 318 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 OR6N1Q8NGY5 312 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms