RNA–Protein interactions for RNA: ENST00000554659.5

VTI1B-204, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTI1B, Length 5,351 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-204ENST00000554659 LINC01465Q8N7H1 131 aa12.91□□□□□ -0.34
VTI1B-204ENST00000554659 PXT1Q8NFP0 134 aa12.91□□□□□ -0.34
VTI1B-204ENST00000554659 RBPMSQ93062 196 aaKnown RBP12.91□□□□□ -0.34
VTI1B-204ENST00000554659 MSI2Q96DH6 328 aaKnown RBP12.91□□□□□ -0.34
VTI1B-204ENST00000554659 NUMA1Q14980 2115 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 TRBV11-1A0A0K0K1C0 115 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 TCRBV5S2A0A599 114 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 PMS2P2O95744 297 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 CA3P07451 260 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 CHRM4P08173 479 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 EEF1A1P68104 462 aaKnown RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 EBPQ15125 230 aaKnown RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 SYT14P1Q58G82 188 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 ABHD17CQ6PCB6 329 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 SH2D5Q6ZV89 423 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 SLC35D2Q76EJ3 337 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 DDX60Q8IY21 1712 aaKnown RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 MMP21Q8N119 569 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 C19orf47Q8N9M1 422 aaKnown RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 ZNF610Q8N9Z0 462 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 RNF141Q8WVD5 230 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 TOE1Q96GM8 510 aaKnown RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 HDAC8Q9BY41 377 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 ULBP2Q9BZM5 246 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 DUSP21Q9H596 190 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 ACER3Q9NUN7 267 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 MED16Q9Y2X0 877 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 D6RAR5 112 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 C1QBP02746 253 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 HOXA9P31269 272 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 OR4Q3Q8NH05 313 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 OR51B6Q9H340 312 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 LIN7BQ9HAP6 207 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 PPP1R14DQ9NXH3 145 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 DNMT3BQ9UBC3 853 aaKnown RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 HCSTQ9UBK5 93 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 PURGQ9UJV8 347 aaKnown RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 PLCH1Q4KWH8 1693 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 MYO18AQ92614 2054 aaKnown RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 C2orf72A6NCS6 295 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 LAMTOR5O43504 91 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 CCR6P51684 374 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 CSNK1G2P78368 415 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 DBPQ10586 325 aaPredicted RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 SMAD2Q15796 467 aaKnown RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 OR13C9Q8NGT0 318 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 LRRC46Q96FV0 321 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 SLC25A21Q9BQT8 299 aaPredicted RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 MARCH5Q9NX47 278 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 PKD1L3Q7Z443 1732 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 RAB19A4D1S5 217 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 AGAP14A8MT82 685 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 H7C1C5 153 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 ICMTO60725 284 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 APOA2P02652 100 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 TNFRSF4P43489 277 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 LCN6P62502 163 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 PAN3Q58A45 887 aaKnown RBP12.9□□□□□ -0.34
VTI1B-204ENST00000554659 SAXO2Q658L1 398 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 TMEM64Q6YI46 380 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 ZNF836Q6ZNA1 936 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 FAM26EQ8N5C1 309 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 PLPP5Q8NEB5 264 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 MED30Q96HR3 178 aa12.9□□□□□ -0.34
VTI1B-204ENST00000554659 IMPA2O14732 288 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 SLC35E2P0CK97 266 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 NAGAP17050 411 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 SRMP19623 302 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 TEAD1P28347 426 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 ERV3-1Q14264 604 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 SOHLH1Q5JUK2 328 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 BPHLQ86WA6 291 aaPredicted RBP12.89□□□□□ -0.35
VTI1B-204ENST00000554659 NKAIN3Q8N8D7 197 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 PKMYT1Q99640 499 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 CHST8Q9H2A9 424 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 SLAMF7Q9NQ25 335 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 NDUFB11Q9NX14 153 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 MUTYHQ9UIF7 546 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 TJP1Q07157 1748 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 SCAF4O95104 1147 aaKnown RBP12.89□□□□□ -0.35
VTI1B-204ENST00000554659 MGST1P10620 155 aaKnown RBP12.89□□□□□ -0.35
VTI1B-204ENST00000554659 NDUFA6P56556 154 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 CD300LGQ6UXG3 332 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 SHISA6Q6ZSJ9 500 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 MOB3CQ70IA8 216 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 VASH1Q7L8A9 365 aaPredicted RBP12.89□□□□□ -0.35
VTI1B-204ENST00000554659 SLC22A24Q8N4F4 322 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 FAM174AQ8TBP5 190 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 ENKD1Q9H0I2 346 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 LOC100289279A0A1B0GTE1 492 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 C20orf202A1L168 122 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 PRAMEF27A3QJZ7 478 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 CDC14CA4D256 554 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 TRAPPC2LH3BP13 241 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 KLK8O60259 260 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 CD14P08571 375 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 POU3F2P20265 443 aaPredicted RBP12.89□□□□□ -0.35
VTI1B-204ENST00000554659 BDH1Q02338 343 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 TMEM52BQ4KMG9 183 aa12.89□□□□□ -0.35
VTI1B-204ENST00000554659 PRAMEF9Q5VWM5 478 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms