RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 KIR3DX1Q9H7L2 352 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TAS2R10Q9NYW0 307 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 GLS2Q9UI32 602 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 GPR160Q9UJ42 338 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 FBXL2Q9UKC9 423 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 DTX4Q9Y2E6 619 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF281Q9Y2X9 895 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 RWDD3Q9Y3V2 267 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 SESN1Q9Y6P5 492 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 FANCMQ8IYD8 2048 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 A0A087WV62 115 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 A0A1W2PQU0 124 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 TMEM72A0PK05 275 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 HMSDA8MTL9 139 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 CHURC1-FNTBB4DL54 471 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 DCTN6O00399 190 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 CYR61O00622 381 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 TRANK1O15050 2925 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 HCRTR1O43613 425 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 FOXS1O43638 330 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 B3GALT2O43825 422 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 KCNJ13O60928 360 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 CTNSO60931 367 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 UPK3AO75631 287 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 NDUFB2O95178 105 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 HIST1H2ABP04908 130 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 CTSBP07858 339 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 FGF2P09038 288 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 SLC35G6P0C7Q6 338 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF35P13682 527 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 ITPKBP27987 946 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 TLX1P31314 330 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 S100A11P31949 105 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 RBM34P42696 430 aaKnown RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 CDKN2AP42771 156 aaKnown RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 LSSP48449 732 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 HTRA4P83105 476 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 MAT1AQ00266 395 aaKnown RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 PON3Q15166 354 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 OTPQ5XKR4 325 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 B3GNTL1Q67FW5 361 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 ZCCHC12Q6PEW1 402 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 PSRC1Q6PGN9 363 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 VITQ6UXI7 678 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 DNM1P46Q6ZS02 220 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 HIST3H2AQ7L7L0 130 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 LRRTM1Q86UE6 522 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 DND1Q8IYX4 353 aaKnown RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 OR52R1Q8NGF1 315 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 OR51A4Q8NGJ6 313 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 OR4C16Q8NGL9 310 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 ZDHHC1Q8WTX9 485 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 C15orf40Q8WUR7 153 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 HIST1H2ACQ93077 130 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 MIB2Q96AX9 1013 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 MRPL48Q96GC5 212 aaKnown RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 STACQ99469 402 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 GINS4Q9BRT9 223 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 ARL6Q9H0F7 186 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 EVA1AQ9H8M9 152 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 FRRS1LQ9P0K9 344 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 DPP7Q9UHL4 492 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 EYSQ5T1H1 3165 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 NUP210LQ5VU65 1888 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 FXYD6-FXYD2A0A087WZ82 144 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 MEIS3P1A6NDR6 274 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 POM121BA6NF01 834 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 GRXCR1A8MXD5 290 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 ACOT7O00154 380 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 TOR1AO14656 332 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 SLC31A1O15431 190 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 PRKNO60260 465 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 TPPPO94811 219 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 GLSO94925 669 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 KDM4BO94953 1096 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 NKX2-2O95096 273 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 LDOC1O95751 146 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 GPR75O95800 540 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 AK1P00568 194 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 CALCBP10092 127 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 MST1P26927 711 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 CTNNB1P35222 781 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 RPL4P36578 427 aaKnown RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 MNDAP41218 407 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 ADPRHP54922 357 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 LGALS3BPQ08380 585 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 STX4Q12846 297 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 HYAL4Q2M3T9 481 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 LIPNQ5VXI9 398 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF660Q6AZW8 331 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 NAXDQ8IW45 347 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 SFTPA2Q8IWL1 248 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 MUC20Q8N307 709 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 RELL2Q8NC24 303 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 BVESQ8NE79 360 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 OR8K3Q8NH51 312 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 SCARB1Q8WTV0 552 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 NSMAFQ92636 917 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 FGF13Q92913 245 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 PNPLA2Q96AD5 504 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms