RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 GLIPR2Q9H4G4 154 aa5.4□□□□□ -1.54
VPS29-210ENST00000552130 ARMC7Q9H6L4 198 aa5.4□□□□□ -1.54
VPS29-210ENST00000552130 C12orf10Q9HB07 376 aa5.4□□□□□ -1.54
VPS29-210ENST00000552130 APOBEC3GQ9HC16 384 aaKnown RBP5.4□□□□□ -1.54
VPS29-210ENST00000552130 UBE2TQ9NPD8 197 aaPredicted RBP5.4□□□□□ -1.54
VPS29-210ENST00000552130 NLE1Q9NVX2 485 aaPredicted RBP5.4□□□□□ -1.54
VPS29-210ENST00000552130 TCF19Q9Y242 345 aa5.4□□□□□ -1.54
VPS29-210ENST00000552130 RCL1Q9Y2P8 373 aaKnown RBP5.4□□□□□ -1.54
VPS29-210ENST00000552130 ANKRD30BQ9BXX2 1392 aa5.4□□□□□ -1.55
VPS29-210ENST00000552130 TVP23AA6NH52 213 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 LILRA5A6NI73 299 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 PPP1R2P9O14990 202 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 UGT2B17O75795 530 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 OR7A10O76100 309 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 IGHV4-31P0DP07 118 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 MYOD1P15172 320 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 NQO1P15559 274 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 FOXN2P32314 431 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 RPL4P36578 427 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 XCR1P46094 333 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 DAP3P51398 398 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 CLDN6P56747 220 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 MTF1Q14872 753 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 SF3A2Q15428 464 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 DUSP5Q16690 384 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 PRTGQ2VWP7 1150 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 TRMT5Q32P41 509 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 TIMM23BQ5SRD1 257 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 FNBP1LQ5T0N5 605 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 TYW3Q6IPR3 259 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 PIWIL4Q7Z3Z4 852 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 TSEN54Q7Z6J9 526 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 SLC47A2Q86VL8 602 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 C10orf67Q8IYJ2 551 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 KIF2BQ8N4N8 673 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 TCEANCQ8N8B7 351 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 MAPKAPK5-AS1Q8N8E1 139 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 C15orf54Q8N8G6 183 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 LFNGQ8NES3 379 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 ATP6V1C2Q8NEY4 427 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 OR2L5Q8NG80 312 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 FBXO25Q8TCJ0 367 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 SPPL2AQ8TCT8 520 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 SETD7Q8WTS6 366 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 STMN2Q93045 179 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 NTAN1Q96AB6 310 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 S100PBPQ96BU1 408 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 SERPINB12Q96P63 405 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 LPAR4Q99677 370 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 SHARPINQ9H0F6 387 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 PELI2Q9HAT8 420 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 PLGRKTQ9HBL7 147 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 AGPAT4Q9NRZ5 378 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 C19orf12Q9NSK7 152 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 TMEM45AQ9NWC5 275 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 C19orf25Q9UFG5 118 aaPredicted RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 CYB5R1Q9UHQ9 305 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS29-210ENST00000552130 UBQLN1Q9UMX0 589 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 GMPPBQ9Y5P6 360 aa5.39□□□□□ -1.55
VPS29-210ENST00000552130 MRPS18BQ9Y676 258 aaKnown RBP5.39□□□□□ -1.55
VPS29-210ENST00000552130 SPATA31D1Q6ZQQ2 1576 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 A0A087WZ39 114 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 TCRBV9S1A1TA0A576 114 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 FUOMA2VDF0 154 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 PLPP3O14495 311 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 ZNHIT1O43257 154 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 ATP8B1O43520 1251 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 MPDU1O75352 247 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 JTBO76095 146 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 OXSR1O95747 527 aaPredicted RBP5.38□□□□□ -1.55
VPS29-210ENST00000552130 TIMP1P01033 207 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 JCHAINP01591 159 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 SNRPAP09012 282 aaKnown RBP5.38□□□□□ -1.55
VPS29-210ENST00000552130 GNAO1P09471 354 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 OR1E1P30953 314 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 HOXD3P31249 432 aaPredicted RBP5.38□□□□□ -1.55
VPS29-210ENST00000552130 DDOSTP39656 456 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 LEPP41159 167 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 RAP1GDS1P52306 607 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 OR2B8PP59922 312 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 RAB4BP61018 213 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 SLC35B1P78383 322 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 CCL7P80098 99 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 FOXI1Q12951 378 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 PDIA2Q13087 525 aaKnown RBP5.38□□□□□ -1.55
VPS29-210ENST00000552130 TRAF3Q13114 568 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 INPP5JQ15735 1006 aaPredicted RBP5.38□□□□□ -1.55
VPS29-210ENST00000552130 DUSP7Q16829 419 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 Q4G0T1 1027 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 ASPRV1Q53RT3 343 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 YIF1BQ5BJH7 314 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 GCSAMLQ5JQS6 135 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 EMBQ6PCB8 327 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 PARM1Q6UWI2 310 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 CCNI2Q6ZMN8 369 aaPredicted RBP5.38□□□□□ -1.55
VPS29-210ENST00000552130 PGAP1Q75T13 922 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 PIGZQ86VD9 579 aa5.38□□□□□ -1.55
VPS29-210ENST00000552130 RNF113BQ8IZP6 322 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms