RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 DNAJC9-AS1A6NH13 148 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 IGHV2-5P01817 119 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 NUDT17P0C025 328 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 CD79AP11912 226 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 KRT4P19013 534 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 ARRB2P32121 409 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 RPS23P62266 143 aaKnown RBP10.87□□□□□ -0.67
SCAF11-208ENST00000546534 CCL8P80075 99 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 EMX2Q04743 252 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 ALKBH6Q3KRA9 238 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 GLIPR1L2Q4G1C9 344 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 COX20Q5RI15 118 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 PHYHD1Q5SRE7 291 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 WBP2NLQ6ICG8 309 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 RBMS3Q6XE24 437 aaKnown RBP10.87□□□□□ -0.67
SCAF11-208ENST00000546534 LRRC74BQ6ZQY2 392 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 TMEM123Q8N131 208 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 C4orf33Q8N1A6 199 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 MFSD8Q8NHS3 518 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 C1orf147Q96MC9 270 aaPredicted RBP10.87□□□□□ -0.67
SCAF11-208ENST00000546534 OXGR1Q96P68 337 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 OR2M2Q96R28 347 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 SLC35A5Q9BS91 424 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 PTDSS2Q9BVG9 487 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 GRPEL1Q9HAV7 217 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 ARMCX1Q9P291 453 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 B3GAT1Q9P2W7 334 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 ZNF346Q9UL40 294 aaKnown RBP10.87□□□□□ -0.67
SCAF11-208ENST00000546534 VWFP04275 2813 aa10.87□□□□□ -0.67
SCAF11-208ENST00000546534 M0R3G1 203 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 AHSA1O95433 338 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 DBIP07108 87 aaKnown RBP10.86□□□□□ -0.67
SCAF11-208ENST00000546534 FAM153BP0C7A2 387 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 PRG2P13727 222 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 GATA3P23771 443 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 RPS5P46782 204 aaKnown RBP10.86□□□□□ -0.67
SCAF11-208ENST00000546534 COPZ1P61923 177 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 IL13RA1P78552 427 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 GALK2Q01415 458 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 MAD2L1Q13257 205 aaPredicted RBP10.86□□□□□ -0.67
SCAF11-208ENST00000546534 C1DQ13901 141 aaKnown RBP10.86□□□□□ -0.67
SCAF11-208ENST00000546534 CHI3L2Q15782 390 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 NKPD1Q17RQ9 610 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 WHAMMP3Q1A5X7 153 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 C11orf91Q3C1V1 193 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 ANXA8L1Q5VT79 327 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 ATG16L1Q676U5 607 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 DOK3Q7L591 496 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 RNF130Q86XS8 419 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 VRK2Q86Y07 508 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 PIK3C3Q8NEB9 887 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 STK35Q8TDR2 534 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 TAF15Q92804 592 aaKnown RBP eCLIP10.86□□□□□ -0.67
SCAF11-208ENST00000546534 MECRQ9BV79 373 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 MED29Q9NX70 200 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 ASIC5Q9NY37 505 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 NOP53Q9NZM5 478 aaKnown RBP10.86□□□□□ -0.67
SCAF11-208ENST00000546534 TAAR3PQ9P1P4 343 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 PRDM4Q9UKN5 801 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 WIPI2Q9Y4P8 454 aa10.86□□□□□ -0.67
SCAF11-208ENST00000546534 A0A096LPI6 279 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 IGHV1-69-2A0A0G2JMI3 117 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 CDHR4A6H8M9 788 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 C17orf100A8MU93 164 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 CLPTM1O96005 669 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 SHBGP04278 402 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 NR2F1P10589 423 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 CRYBB2P43320 205 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 GIPRP48546 466 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 PTDSS1P48651 473 aaKnown RBP10.85□□□□□ -0.67
SCAF11-208ENST00000546534 AQP5P55064 265 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 EGR4Q05215 589 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 CASP8Q14790 479 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 CARD17Q5XLA6 110 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 ZNF813Q6ZN06 617 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 ZNF836Q6ZNA1 936 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 PEX5LQ8IYB4 626 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 VPS37AQ8NEZ2 397 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 MGARPQ8TDB4 240 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 KTI12Q96EK9 354 aaPredicted RBP10.85□□□□□ -0.67
SCAF11-208ENST00000546534 TSPAN32Q96QS1 320 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 TXLNGYQ9BZA5 131 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 SLITRK2Q9H156 845 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 HINT3Q9NQE9 182 aaKnown RBP10.85□□□□□ -0.67
SCAF11-208ENST00000546534 ZNF224Q9NZL3 707 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 NOTCH1P46531 2555 aa10.85□□□□□ -0.67
SCAF11-208ENST00000546534 DSPPQ9NZW4 1301 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 WNK2Q9Y3S1 2297 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 SMIM23A6NLE4 172 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 M0R082 166 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 VSIG8P0DPA2 414 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 NCF2P19878 526 aaPredicted RBP10.84□□□□□ -0.67
SCAF11-208ENST00000546534 GTF2E2P29084 291 aaKnown RBP10.84□□□□□ -0.67
SCAF11-208ENST00000546534 RAD52P43351 418 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 RAB1AP62820 205 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 LCN2P80188 198 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 RAB39AQ14964 217 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 MAPK11Q15759 364 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 MMEL1Q495T6 779 aa10.84□□□□□ -0.67
SCAF11-208ENST00000546534 SAMD5Q5TGI4 173 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms