RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	TPRA1	Q86W33	373 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	TRIM69	Q86WT6	500 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	GPR65	Q8IYL9	337 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	OR2L13	Q8N349	312 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	C17orf47	Q8NEP4	570 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	IL1F10	Q8WWZ1	152 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	ST8SIA1	Q92185	356 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	CLDN23	Q96B33	292 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	FAF2	Q96CS3	445 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	PPP1R16A	Q96I34	528 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	MCCC1	Q96RQ3	725 aa	Predicted RBP	3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	ZNF670	Q9BS34	389 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	BOLA2	Q9H3K6	86 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	CWH43	Q9H720	699 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	YY1AP1	Q9H869	796 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	POPDC2	Q9HBU9	364 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	IMPAD1	Q9NX62	359 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	SPATA7	Q9P0W8	599 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	SAMD4A	Q9UPU9	718 aa	Known RBP	3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	ERVW-1	Q9UQF0	538 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	PDE10A	Q9Y233	779 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	TMED5	Q9Y3A6	229 aa		3.18	□□□□□ -1.9
SNHG1-222	ENST00000545308	DMXL2	Q8TDJ6	3036 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	NUP205	Q92621	2012 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	TDRD15	B5MCY1	1934 aa	Known RBP	3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	LOC100131303	A0A0U1RQF7	123 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308		A0A1W2PPE3	182 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	FRG2C	A6NGY1	282 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	ACOD1	A6NK06	481 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	VSTM2B	A6NLU5	285 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	HIDE1	A8MVS5	230 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308		E9PLD3	99 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	CDX4	O14627	284 aa	Predicted RBP	3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	DNALI1	O14645	258 aa	Predicted RBP	3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	GPAA1	O43292	621 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	UPK3A	O75631	287 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	NOL4	O94818	638 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	DIRAS1	O95057	198 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	GAPDH	P04406	335 aa	Known RBP	3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	HOXD4	P09016	255 aa	Predicted RBP	3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	POLR2M	P0CAP2	368 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	ETS2	P15036	469 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	SERPINA2	P20848	420 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	CCNC	P24863	283 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	GCA	P28676	217 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	IL2RG	P31785	369 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	QARS	P47897	775 aa	Known RBP	3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	NOV	P48745	357 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	CRYBB1	P53674	252 aa	Predicted RBP	3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	PRRX1	P54821	245 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	SNAP25	P60880	206 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	SRSF5	Q13243	272 aa	Known RBP	3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	DPYSL2	Q16555	572 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	C14orf177	Q52M58	125 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	C6orf226	Q5I0X4	101 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	ADAM5	Q6NVV9	412 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	SLC47A2	Q86VL8	602 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	ECHDC2	Q86YB7	292 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	KRTAP7-1	Q8IUC3	87 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	C9orf40	Q8IXQ3	194 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	SLC35F2	Q8IXU6	374 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	FRAT1	Q92837	279 aa	Predicted RBP	3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	MSANTD3	Q96H12	275 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	TIMD4	Q96H15	378 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	ZNF599	Q96NL3	588 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	RANBP9	Q96S59	729 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	PLIN2	Q99541	437 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	SLC35A5	Q9BS91	424 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	TRIM62	Q9BVG3	475 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	B3GNT2	Q9NY97	397 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	SDK1	Q7Z5N4	2213 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	ZZEF1	O43149	2961 aa		3.17	□□□□□ -1.9
SNHG1-222	ENST00000545308	LAMA1	P25391	3075 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	THADA	Q6YHU6	1953 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	ASH1L	Q9NR48	2969 aa	Known RBP	3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	PDCD11	Q14690	1871 aa	Known RBP	3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	EFCAB7	A8K855	629 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	ZNF705E	A8MWA4	302 aa	Predicted RBP	3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308		E9PAM4	449 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308		K7ENP7	123 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	RGS16	O15492	202 aa	Predicted RBP	3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	PRKY	O43930	277 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	GALR3	O60755	368 aa	Predicted RBP	3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	PABPC4L	P0CB38	370 aa	Known RBP	3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	ATP1B2	P14415	290 aa	Predicted RBP	3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	BCL3	P20749	454 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	CSRP1	P21291	193 aa	Known RBP	3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	IGHV1-2	P23083	117 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	HOXA6	P31267	233 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	RPL13A	P40429	203 aa	Known RBP	3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	MAP3K8	P41279	467 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	XCR1	P46094	333 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	PRKX	P51817	358 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	ENPEP	Q07075	957 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	GK3P	Q14409	553 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	ALX1	Q15699	326 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	SSX2	Q16385	188 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	BCL7A	Q4VC05	210 aa		3.16	□□□□□ -1.9
SNHG1-222	ENST00000545308	DMRTC1	Q5HYR2	192 aa		3.16	□□□□□ -1.9

Retrieved 100 of 20,778 RNA–protein pairs in 42 ms