RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	STX11	O75558	287 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	SNAPC5	O75971	98 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	LPL	P06858	475 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	TFPI	P10646	304 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	NID1	P14543	1247 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	ZNF10	P21506	573 aa	Predicted RBP	13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	SHC1	P29353	583 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	TLX1	P31314	330 aa	Predicted RBP	13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	GSG1	Q2KHT4	349 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	PABPC1L2A	Q5JQF8	200 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	PEAR1	Q5VY43	1037 aa	Predicted RBP	13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	OR52R1	Q8NGF1	315 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	OR2I1P	Q8NGU4	316 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	SAP25	Q8TEE9	199 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	HSD17B8	Q92506	261 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	RFK	Q969G6	155 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	BPIFA2	Q96DR5	249 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	MS4A3	Q96HJ5	214 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	RAB33B	Q9H082	229 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	CYSLTR2	Q9NS75	346 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	COA4	Q9NYJ1	87 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	SIGLEC6	O43699	453 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	SELENOF	O60613	162 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	PPP1R3D	O95685	299 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	CSF2RB	P32927	897 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	GABRA4	P48169	554 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	LPAL2	Q16609	132 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	PRTG	Q2VWP7	1150 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	ARL9	Q6T311	187 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	ATRAID	Q6UW56	229 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	NLRC3	Q7RTR2	1065 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	EIF4E3	Q8N5X7	224 aa	Known RBP	13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	METTL27	Q8N6F8	245 aa	Predicted RBP	13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	MOSPD2	Q8NHP6	518 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	ANKRD9	Q96BM1	317 aa	Predicted RBP	13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	HS6ST2	Q96MM7	605 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	CD180	Q99467	661 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	ANKRD19P	Q9H560	264 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	GAREM1	Q9H706	876 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	PTGFRN	Q9P2B2	879 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	ZMIZ1	Q9ULJ6	1067 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	SPATA2	Q9UM82	520 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	C4orf47	A7E2U8	309 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	SSNA1	O43805	119 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	CBX7	O95931	251 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	RPS4Y1	P22090	263 aa	Known RBP	13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	ACVR1B	P36896	505 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	GPR3	P46089	330 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	TSPAN5	P62079	268 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	MAT1A	Q00266	395 aa	Known RBP	13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	FOXK2	Q01167	660 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	SLC3A1	Q07837	685 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	CRMP1	Q14194	572 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	KCNAB1	Q14722	419 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	IDNK	Q5T6J7	187 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	RANBP3L	Q86VV4	465 aa	Predicted RBP	13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	CA13	Q8N1Q1	262 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	TNFRSF13C	Q96RJ3	184 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	SLC19A3	Q9BZV2	496 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	FN3K	Q9H479	309 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	ING1	Q9UK53	422 aa	Predicted RBP	13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	CLEC4A	Q9UMR7	237 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	KCNK7	Q9Y2U2	307 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	RNF13	O43567	381 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	DUX1	O43812	170 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	SRPX2	O60687	465 aa	Predicted RBP	13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	TOX	O94900	526 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	CD1C	P29017	333 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	OR12D2	P58182	307 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	ZP1	P60852	638 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	DHODH	Q02127	395 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	KRT74	Q7RTS7	529 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	LRRC28	Q86X40	367 aa	Predicted RBP	13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	OR5M3	Q8NGP4	307 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	ZNRF4	Q8WWF5	429 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	CCDC74A	Q96AQ1	378 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	METTL17	Q9H7H0	456 aa	Predicted RBP	13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	LYRM4	Q9HD34	91 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	PDE7B	Q9NP56	450 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	MBD2	Q9UBB5	411 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	SIGLEC7	Q9Y286	467 aa		13.69	□□□□□ -0.22
CHFR-223	ENST00000544268	GPR75	O95800	540 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	ATP1B1	P05026	303 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	CALCR	P30988	508 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	LYPD4	Q6UWN0	246 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	MEPCE	Q7L2J0	689 aa	Known RBP	13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	ACBD7	Q8N6N7	88 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	OR4C6	Q8NH72	309 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	FBXL2	Q9UKC9	423 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	PLCL2	Q9UPR0	1127 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	TCRBV16S1A1N1	A0A5B0	115 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	EEF1E1	O43324	174 aa	Known RBP	13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	RGS11	O94810	467 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	SNAPIN	O95295	136 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	HLA-DPB1	P04440	258 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	H2AFB2	P0C5Z0	115 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	PAICS	P22234	425 aa	Known RBP	13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	PITPNB	P48739	271 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	PSG6	Q00889	435 aa		13.68	□□□□□ -0.22
CHFR-223	ENST00000544268	SLC36A2	Q495M3	483 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms