RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 OPN4Q9UHM6 478 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 PFDN2Q9UHV9 154 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 SCML1Q9UN30 329 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 HIF3AQ9Y2N7 669 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 OR6C74A6NCV1 312 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 TMEM212A6NML5 194 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 CDK2AP1O14519 115 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 PHYHO14832 338 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 RBBP9O75884 186 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 NMBP08949 121 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 CTRB1P17538 263 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 ANXA7P20073 488 aaKnown RBP12.52□□□□□ -0.41
VPS33A-208ENST00000543633 DCTDP32321 178 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 HLXQ14774 488 aaPredicted RBP12.52□□□□□ -0.41
VPS33A-208ENST00000543633 TCEA2Q15560 299 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 CTRB2Q6GPI1 263 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 OR5M10Q6IEU7 315 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 ENPP7Q6UWV6 458 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 KANSL1Q7Z3B3 1105 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 NUP54Q7Z3B4 507 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 HSD17B13Q7Z5P4 300 aaPredicted RBP12.52□□□□□ -0.41
VPS33A-208ENST00000543633 CDC20BQ86Y33 519 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 YAF2Q8IY57 180 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 SDR16C5Q8N3Y7 309 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 CSNK1A1LQ8N752 337 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 OR6N1Q8NGY5 312 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 DOK4Q8TEW6 326 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 GCDHQ92947 438 aaPredicted RBP12.52□□□□□ -0.41
VPS33A-208ENST00000543633 RASD2Q96D21 266 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 Q9N2J8 555 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 SLC17A5Q9NRA2 495 aa12.52□□□□□ -0.41
VPS33A-208ENST00000543633 LRP4O75096 1905 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 SERINC4A6NH21 518 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 A8MXK9 166 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 FOXS1O43638 330 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 PRAMEF2O60811 474 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 SERPINI2O75830 405 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 HRGP04196 525 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 CD14P08571 375 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 MELTFP08582 738 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 PNMTP11086 282 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 ADRA2CP18825 462 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 CSRP1P21291 193 aaKnown RBP12.51□□□□□ -0.41
VPS33A-208ENST00000543633 GRK6P43250 576 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 IGLV3-21P80748 117 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-208ENST00000543633 LTBQ06643 244 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS33A-208ENST00000543633 LEG1Q6P5S2 330 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 FAM122BQ7Z309 247 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 KRT77Q7Z794 578 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 OR5T3Q8NGG3 340 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 ADAMTS18Q8TE60 1221 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 CCDC74AQ96AQ1 378 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 C3orf49Q96BT1 292 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 TOE1Q96GM8 510 aaKnown RBP12.51□□□□□ -0.41
VPS33A-208ENST00000543633 COMMD4Q9H0A8 199 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 STEAP1Q9UHE8 339 aa12.51□□□□□ -0.41
VPS33A-208ENST00000543633 TBC1D3DA0A087WVF3 549 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 A0A1B0GW55 424 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 ANXA2P2A6NMY6 339 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 PRR32B1ATL7 298 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 TBC1D3LB9A6J9 549 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 SCAMP1O15126 338 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 SLC31A1O15431 190 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 CSTAP01040 98 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 ANXA2P07355 339 aaKnown RBP12.5□□□□□ -0.41
VPS33A-208ENST00000543633 TBC1D3HP0C7X1 549 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 DUX4L2P0CJ85 424 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 DUX4L3P0CJ86 424 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 DUX4L4P0CJ87 422 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 DUX4L5P0CJ88 424 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 DUX4L6P0CJ89 424 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 DUX4L7P0CJ90 424 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 GABRA1P14867 456 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 NAGAP17050 411 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 SDHAP31040 664 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 KIR2DL1P43626 348 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-208ENST00000543633 GMFBP60983 142 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 ERVK-25P63136 954 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 EGR3Q06889 387 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 RASGEF1BQ0VAM2 473 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 FAM53BQ14153 422 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 GPR18Q14330 331 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 LIPNQ5VXI9 398 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 TBC1D3CQ6IPX1 549 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 ANKRD16Q6P6B7 361 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 TMUB2Q71RG4 321 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 SERPINA12Q8IW75 414 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 TBC1D3Q8IZP1 549 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-208ENST00000543633 LRRC75AQ8NAA5 344 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 OR10G6Q8NH81 332 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 ZPLD1Q8TCW7 415 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 MRPL38Q96DV4 380 aaKnown RBP12.5□□□□□ -0.41
VPS33A-208ENST00000543633 KLHL15Q96M94 604 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 GABRG3Q99928 467 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 ALX4Q9H161 411 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-208ENST00000543633 CDCP1Q9H5V8 836 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 CCDC86Q9H6F5 360 aaKnown RBP12.5□□□□□ -0.41
VPS33A-208ENST00000543633 DUX4Q9UBX2 424 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 MRM2Q9UI43 246 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms