RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ZNF385A	Q96PM9	386 aa	Known RBP	9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	EMC6	Q9BV81	110 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	SFXN3	Q9BWM7	321 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	TSSK6	Q9BXA6	273 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	GABARAPL1	Q9H0R8	117 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	BCO1	Q9HAY6	547 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	TBC1D23	Q9NUY8	699 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	MED29	Q9NX70	200 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	B3GAT1	Q9P2W7	334 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	GRHPR	Q9UBQ7	328 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	NKX1-2	Q9UD57	310 aa	Predicted RBP	9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	ING1	Q9UK53	422 aa	Predicted RBP	9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	RNF6	Q9Y252	685 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	POFUT2	Q9Y2G5	429 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	IER3IP1	Q9Y5U9	82 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	FLVCR1	Q9Y5Y0	555 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	POLE	Q07864	2286 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	NCKAP5	O14513	1909 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	KALRN	O60229	2985 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	SLC35F4	A4IF30	521 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	EEF1E1-BLOC1S5	C9J1V9	151 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	EEF1E1	O43324	174 aa	Known RBP	9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	MGRN1	O60291	552 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	MITF	O75030	526 aa	Predicted RBP	9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	AGFG2	O95081	481 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	PPP1R3D	O95685	299 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	CD14	P08571	375 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	IGFBP1	P08833	259 aa	Predicted RBP	9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	OSM	P13725	252 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	AGTR1	P30556	359 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	CHRNB4	P30926	498 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	DAP3	P51398	398 aa	Known RBP	9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ALDH3A2	P51648	485 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	RPS6KA3	P51812	740 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	RPS4X	P62701	263 aa	Known RBP	9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ACKR1	Q16570	336 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	SLC36A3	Q495N2	470 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	VWA1	Q6PCB0	445 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	THSD4	Q6ZMP0	1018 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	DPY19L2P2	Q6ZN68	376 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ZNF620	Q6ZNG0	422 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	BTLA	Q7Z6A9	289 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	MRGPRG	Q86SM5	289 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	KIF18B	Q86Y91	864 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	GALNT4	Q8N4A0	578 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ZIC4	Q8N9L1	334 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	OR6K3	Q8NGY3	331 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	OR6N1	Q8NGY5	312 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ASB5	Q8WWX0	329 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	APH1A	Q96BI3	265 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ERMAP	Q96PL5	475 aa	Predicted RBP	9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	KATNB1	Q9BVA0	655 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	OSBPL10	Q9BXB5	764 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	TEX12	Q9BXU0	123 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ENKD1	Q9H0I2	346 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	RIBC2	Q9H4K1	309 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	UPB1	Q9UBR1	384 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ZNF629	Q9UEG4	869 aa	Predicted RBP	9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ENOPH1	Q9UHY7	261 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ZNF346	Q9UL40	294 aa	Known RBP	9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	ZNF462	Q96JM2	2506 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	FREM3	P0C091	2139 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	CHD6	Q8TD26	2715 aa		9.02	□□□□□ -0.97
CPSF7-221	ENST00000543545	FAM90A27P	A6NNH2	459 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	SOCS2	O14508	198 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	XKRY	O14609	159 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	TRAF3IP2	O43734	574 aa	Predicted RBP	9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	ZG16	O60844	167 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	SLC43A1	O75387	559 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	ATP6V1G2	O95670	118 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	IL18BP	O95998	194 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	IGHV3-9	P01782	118 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	ZNF26	P17031	533 aa	Predicted RBP	9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	CDH2	P19022	906 aa	Predicted RBP	9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	PEX2	P28328	305 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	ACVR1B	P36896	505 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	SELENOP	P49908	381 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	CLRN1	P58418	232 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	RPL27	P61353	136 aa	Known RBP	9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	ADORA2A-AS1	P86434	159 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	RIPK1	Q13546	671 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	CAMK2D	Q13557	499 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	FHL1	Q13642	323 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	ZIK1	Q3SY52	487 aa	Predicted RBP	9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	KDM4D	Q6B0I6	523 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	GPR139	Q6DWJ6	353 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	HDDC2	Q7Z4H3	204 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	LUZP2	Q86TE4	346 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	CLDN22	Q8N7P3	220 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	LRRC75A	Q8NAA5	344 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	OR2T33	Q8NG76	320 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	CA5BP1	Q8WTZ4	195 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	TMEM45B	Q96B21	275 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	STARD4	Q96DR4	205 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	ADAD1	Q96M93	576 aa	Known RBP	9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	ZNF570	Q96NI8	536 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	SLC29A1	Q99808	456 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	PLA2G12A	Q9BZM1	189 aa		9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	OPN3	Q9H1Y3	402 aa	Predicted RBP	9.01	□□□□□ -0.97
CPSF7-221	ENST00000543545	VCX	Q9H320	206 aa		9.01	□□□□□ -0.97

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms