RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 TRIM64A6NGJ6 449 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 TRIM64BA6NI03 449 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 ZNF99A8MXY4 864 aaPredicted RBP10.09□□□□□ -0.79
RTN3-209ENST00000538995 IGLV1-44P01699 117 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 THY1P04216 161 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 THRBP10828 461 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 CBLP22681 906 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 CDKN1AP38936 164 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 RBM34P42696 430 aaKnown RBP10.09□□□□□ -0.79
RTN3-209ENST00000538995 CEACAM16Q2WEN9 425 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 KRTAP21-3Q3LHN1 58 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 CLEC9AQ6UXN8 241 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 NHLRC1Q6VVB1 395 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 B3GLCTQ6Y288 498 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 WDR88Q6ZMY6 472 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 ZNF627Q7L945 461 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 CARM1Q86X55 608 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 RBM45Q8IUH3 476 aaKnown RBP10.09□□□□□ -0.79
RTN3-209ENST00000538995 C20orf196Q8IYI0 205 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 MUC15Q8N387 334 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 OR2T12Q8NG77 320 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 RCN3Q96D15 328 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 ADAD1Q96M93 576 aaKnown RBP10.09□□□□□ -0.79
RTN3-209ENST00000538995 HS6ST2Q96MM7 605 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 KCNS3Q9BQ31 491 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 C1QTNF6Q9BXI9 259 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 CRLF2Q9HC73 371 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 B3GAT2Q9NPZ5 323 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 ARMCX1Q9P291 453 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 ZNF229Q9UJW7 825 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 TLN2Q9Y4G6 2542 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 ZANQ9Y493 2812 aa10.09□□□□□ -0.79
RTN3-209ENST00000538995 IGHV1-18A0A0C4DH31 117 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 ELOVL7A1L3X0 281 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 ZNF726A6NNF4 738 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 ATP6V1G2-DDX39BF2Z307 99 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 H7C417 338 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 OR5F1O95221 314 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 OR6A2O95222 327 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 IGKV3-15P01624 115 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 IGHV4-39P01824 125 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 CRYAAP02489 173 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 ADORA3P0DMS8 318 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 BMP4P12644 408 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 HLA-DOBP13765 273 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 PTNP21246 168 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 KDELR2P33947 212 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 FABP6P51161 128 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 ARF1P84077 181 aaKnown RBP10.08□□□□□ -0.8
RTN3-209ENST00000538995 ZP4Q12836 540 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 SF3A3Q12874 501 aaKnown RBP eCLIP10.08□□□□□ -0.8
RTN3-209ENST00000538995 CLEC12BQ2HXU8 276 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 TSPYL5Q86VY4 417 aaPredicted RBP10.08□□□□□ -0.8
RTN3-209ENST00000538995 MICU2Q8IYU8 434 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 CIARTQ8N365 385 aaPredicted RBP10.08□□□□□ -0.8
RTN3-209ENST00000538995 PRSS27Q9BQR3 290 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 NANSQ9NR45 359 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 MED29Q9NX70 200 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 SH3GLB1Q9Y371 365 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 ATP23Q9Y6H3 246 aa10.08□□□□□ -0.8
RTN3-209ENST00000538995 A0A096LPE4 126 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 A0A1W2PPZ6 126 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 SLC35F4A4IF30 521 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 HTR3EA5X5Y0 456 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 LRRN3E7EW58 273 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 M0R3G1 203 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 NDUFAB1O14561 156 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 ENTPD5O75356 428 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 PDE5AO76074 875 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 CH25HO95992 272 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 ASAH2BP0C7U1 165 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 COX4I1P13073 169 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 CBR1P16152 277 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 AHCYP23526 432 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 APOBEC3AP31941 199 aaPredicted RBP10.07□□□□□ -0.8
RTN3-209ENST00000538995 ARR3P36575 388 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 TAS2R41P59536 307 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 NAAAQ02083 359 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 CHRNB3Q05901 458 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 LRRC23Q53EV4 343 aaPredicted RBP10.07□□□□□ -0.8
RTN3-209ENST00000538995 CYBRD1Q53TN4 286 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 HACD2Q6Y1H2 254 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 DEF8Q6ZN54 512 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 DNM1P46Q6ZS02 220 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 SPATA21Q7Z572 469 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 NANOGNBQ7Z5D8 188 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 POU5F2Q8N7G0 328 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 OR4F15Q8NGB8 312 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 OR6X1Q8NH79 312 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 LZICQ8WZA0 190 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 POM121Q96HA1 1249 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 SMR3AQ99954 134 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 HOPXQ9BPY8 73 aaPredicted RBP10.07□□□□□ -0.8
RTN3-209ENST00000538995 EMC6Q9BV81 110 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 CACNG6Q9BXT2 260 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 ULBP2Q9BZM5 246 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 CMTM6Q9NX76 183 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 USP22Q9UPT9 525 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 MOKQ9UQ07 419 aa10.07□□□□□ -0.8
RTN3-209ENST00000538995 CSPG4Q6UVK1 2322 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms