RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ACTRT3Q9BYD9 372 aa7.75□□□□□ -1.17
USP28-205ENST00000537706 NANOGQ9H9S0 305 aa7.75□□□□□ -1.17
USP28-205ENST00000537706 SAR1AQ9NR31 198 aa7.75□□□□□ -1.17
USP28-205ENST00000537706 THAP1Q9NVV9 213 aa7.75□□□□□ -1.17
USP28-205ENST00000537706 SLC7A8Q9UHI5 535 aa7.75□□□□□ -1.17
USP28-205ENST00000537706 FBXL3Q9UKT7 428 aa7.75□□□□□ -1.17
USP28-205ENST00000537706 TMCO1Q9UM00 188 aa7.75□□□□□ -1.17
USP28-205ENST00000537706 FZR1Q9UM11 496 aa7.75□□□□□ -1.17
USP28-205ENST00000537706 TRAPPC2LH3BP13 241 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 OTCP00480 354 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 KRT6AP02538 564 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 KRT6BP04259 564 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 MELTFP08582 738 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 ANXA4P09525 319 aaPredicted RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 OR12D1P0DN82 309 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 BCKDHAP12694 445 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 NQO1P15559 274 aaKnown RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 MAP3K8P41279 467 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 KRT6CP48668 564 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 ATP12AP54707 1039 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 ELF3P78545 371 aaPredicted RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 HSPB3Q12988 150 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 DUSP5Q16690 384 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 CCNJQ5T5M9 372 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 VASH1Q7L8A9 365 aaPredicted RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 LRP11Q86VZ4 500 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 ZSCAN4Q8NAM6 433 aaPredicted RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 OR4F6Q8NGB9 312 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 OR9K2Q8NGE7 335 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 PMM1Q92871 262 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 ALKBH3Q96Q83 286 aaPredicted RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 EGLN1Q9GZT9 426 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 FARSBQ9NSD9 589 aaKnown RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 TAS2R7Q9NYW3 318 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 PCDHGB4Q9UN71 923 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 SOX21Q9Y651 276 aaPredicted RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 BTBD17A6NE02 478 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 MGRN1O60291 552 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 MYL2P10916 166 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 ASMTP46597 345 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 KLF3P57682 345 aaPredicted RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 ROR2Q01974 943 aaKnown RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 ZNF763Q0D2J5 394 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 PDE7AQ13946 482 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 NDUFAF6Q330K2 333 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 PRAMEF8Q5VWM4 474 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 PRAMEF7Q5VXH5 474 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 MYPOPQ86VE0 399 aaPredicted RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 ANKK1Q8NFD2 765 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 ADAMTS15Q8TE58 950 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 STACQ99469 402 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 LINC00470Q9BZP3 86 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 DPAGT1Q9H3H5 408 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 DENND2DQ9H6A0 471 aaPredicted RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 CTPS2Q9NRF8 586 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 TMEM216Q9P0N5 145 aa7.74□□□□□ -1.17
USP28-205ENST00000537706 MYEF2Q9P2K5 600 aaKnown RBP7.74□□□□□ -1.17
USP28-205ENST00000537706 A8MXK9 166 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 TMEM114B3SHH9 223 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 H0YL77 283 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 C2P06681 752 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 KRT16P08779 473 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 SBK2P0C263 348 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 CPA3P15088 417 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 UQCRC2P22695 453 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 RASSF2P50749 326 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 ARF1P84077 181 aaKnown RBP7.73□□□□□ -1.17
USP28-205ENST00000537706 H3F3AP84243 136 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 EMX1Q04741 257 aaPredicted RBP7.73□□□□□ -1.17
USP28-205ENST00000537706 EGR3Q06889 387 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 TRAF3Q13114 568 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 RIPK1Q13546 671 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 TSTQ16762 297 aaKnown RBP7.73□□□□□ -1.17
USP28-205ENST00000537706 MSMPQ1L6U9 139 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 DMRTC1Q5HYR2 192 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 CDC73Q6P1J9 531 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 NIPAL3Q6P499 406 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 ZCCHC23Q6ZST2 131 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 Q6ZSV7 163 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 GPAT4Q86UL3 456 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 DNAJA3Q96EY1 480 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 TMEM237Q96Q45 408 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 RAB3IPQ96QF0 476 aaPredicted RBP7.73□□□□□ -1.17
USP28-205ENST00000537706 EBPLQ9BY08 206 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 PATZ1Q9HBE1 687 aaKnown RBP7.73□□□□□ -1.17
USP28-205ENST00000537706 PALMDQ9NP74 551 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 DUSP22Q9NRW4 184 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 NPTNQ9Y639 398 aa7.73□□□□□ -1.17
USP28-205ENST00000537706 PDPK1O15530 556 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 RAB36O95755 333 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 T-ENOLP0DO92 83 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 CD79AP11912 226 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 CPT2P23786 658 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 HTR3AP46098 478 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 SLC1A6P48664 564 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 PRKAA2P54646 552 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 DBPQ10586 325 aaPredicted RBP7.72□□□□□ -1.17
USP28-205ENST00000537706 DLG1Q12959 904 aa7.72□□□□□ -1.17
USP28-205ENST00000537706 KRT72Q14CN4 511 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms