RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 GPX5O75715 221 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 PNMTP11086 282 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 ABCD3P28288 659 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 SLC1A3P43003 542 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 ELOA3BQ3SY89 546 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 LIPKQ5VXJ0 399 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 LYPD8Q6UX82 237 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 PHC2Q8IXK0 858 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 SLC43A2Q8N370 569 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 FAM98AQ8NCA5 519 aaKnown RBP10.76□□□□□ -0.69
CLIP1-208ENST00000537004 ELOA3Q8NG57 546 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 SH3YL1Q96HL8 342 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-208ENST00000537004 HCAR1Q9BXC0 346 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 SLC19A3Q9BZV2 496 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 ITPR2Q14571 2701 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 WIPF3A6NGB9 483 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 FAM166BA8MTA8 275 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 LRRN3E7EW58 273 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 PRR23D1E9PI22 279 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 KLRC4-KLRK1H3BQV0 150 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 SLC19A2O60779 497 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 IGHA1P01876 353 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 PRR23D2P0DMB1 279 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 NOS3P29474 1203 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ATP6V1E1P36543 226 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 SLC9A3P48764 834 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 DNASE1L1P49184 302 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 PNLIPRP2P54317 469 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF117Q03924 483 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF791Q3KP31 576 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 C4orf17Q53FE4 359 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF362Q5T0B9 420 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 PRAMEF20Q5VT98 475 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 MEPCEQ7L2J0 689 aaKnown RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ATG4DQ86TL0 474 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 LHFPL3Q86UP9 236 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 LRRC17Q8N6Y2 441 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ZFP62Q8NB50 900 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 OR10G3Q8NGC4 313 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 OR6Q1Q8NGQ2 317 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 OR9Q1Q8NGQ5 310 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 GATAD2BQ8WXI9 593 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 PTP4A1Q93096 173 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 LAT2Q9GZY6 243 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 SEC14L4Q9UDX3 406 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 SPIN1Q9Y657 262 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 TEX15Q9BXT5 2789 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 IGKV1D-42A0A075B6H8 117 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 A0A1W2PQD3 144 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ZC3H12DA2A288 527 aaKnown RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 CLDN25C9JDP6 229 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 J3QRK9 145 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 CDK2AP1O14519 115 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 TFECO14948 347 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 HCRTR2O43614 444 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 CDC40O60508 579 aaKnown RBP eCLIP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 NDUFB2O95178 105 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 PEPDP12955 493 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 CPEP16870 476 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF3P17036 446 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 HK1P19367 917 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 PAICSP22234 425 aaKnown RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 PSMA1P25786 263 aaKnown RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 COL8A1P27658 744 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ITGADQ13349 1161 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ANKDD1AQ495B1 522 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ARHGAP11AQ6P4F7 1023 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 OPN5Q6U736 354 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 B3GLCTQ6Y288 498 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 C3P1Q6ZMU1 363 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 FGD2Q7Z6J4 655 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 MARCH3Q86UD3 253 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 SLC37A3Q8NCC5 494 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 OR2M7Q8NG81 312 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 OR51G2Q8NGK0 314 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 MCFD2Q8NI22 146 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF524Q96C55 264 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 SPACA9Q96E40 222 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 KLHDC3Q9BQ90 382 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 TBL1XR1Q9BZK7 514 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 DEFB127Q9H1M4 99 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 HMG20AQ9NP66 347 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 EXOSC4Q9NPD3 245 aaKnown RBP10.75□□□□□ -0.69
CLIP1-208ENST00000537004 AKIP1Q9NQ31 210 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 TNFRSF10DQ9UBN6 386 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 STUB1Q9UNE7 303 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 CORINQ9Y5Q5 1042 aa10.75□□□□□ -0.69
CLIP1-208ENST00000537004 ALG1L2C9J202 215 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 J3QRE1 110 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 NDUFB5O43674 189 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 OR7A10O76100 309 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 CLDN1O95832 211 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 TSPAN19P0C672 248 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 CD79BP40259 229 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 CRYBB2P43320 205 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 SLC6A8P48029 635 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 PSPHP78330 225 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 CRMP1Q14194 572 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 C3AR1Q16581 482 aa10.74□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF404Q494X3 552 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms