RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SLC43A1O75387 559 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 OR7A10O76100 309 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 ADORA3P0DMS8 318 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 HLA-DOBP13765 273 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 YAP1P46937 504 aaKnown RBP13.23□□□□□ -0.29
CPSF1-208ENST00000532560 NR1H2P55055 460 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 TGFBR3Q03167 851 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 ZP4Q12836 540 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 TRAM2Q15035 370 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 GABRA6Q16445 453 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 C1QTNF12Q5T7M4 302 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 NHLRC1Q6VVB1 395 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 NANOGNBQ7Z5D8 188 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 TSEN54Q7Z6J9 526 aaKnown RBP13.23□□□□□ -0.29
CPSF1-208ENST00000532560 CYP4Z1Q86W10 505 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 TMEM123Q8N131 208 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 C17orf78Q8N4C9 275 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 FAM86B1Q8N7N1 296 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 ANKK1Q8NFD2 765 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 LIPHQ8WWY8 451 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 SGTBQ96EQ0 304 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 PIK3IP1Q96FE7 263 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 BOD1Q96IK1 185 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 NSMCE2Q96MF7 247 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 MUS81Q96NY9 551 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 OR2M2Q96R28 347 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 NR1H4Q96RI1 486 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-208ENST00000532560 ANKRD19PQ9H560 264 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 PLEKHF2Q9H8W4 249 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 S100A14Q9HCY8 104 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 NGBQ9NPG2 151 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 C20orf141Q9NUB4 165 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 HRNRQ86YZ3 2850 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-208ENST00000532560 TACC2O95359 2948 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 POLQO75417 2590 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 PIP5K1CO60331 668 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 KRT33AO76009 404 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 OR6A2O95222 327 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 SEMG1P04279 462 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 HIST1H2ABP04908 130 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 UMPSP11172 480 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 FUT4P22083 530 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 AHCYP23526 432 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 MSX2P35548 267 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-208ENST00000532560 LGALS3BPQ08380 585 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 PPA1Q15181 289 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 STK11Q15831 433 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 HIST3H2AQ7L7L0 130 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 LRRC17Q8N6Y2 441 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 PIK3C3Q8NEB9 887 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 NRGNQ92686 78 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 HIST1H2ACQ93077 130 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 MUCL1Q96DR8 90 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 C7orf34Q96L11 122 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 HS3ST6Q96QI5 342 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 MUC13Q9H3R2 512 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 TAS2R5Q9NYW4 299 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 NDUFAF4Q9P032 175 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 RHCGQ9UBD6 479 aa13.22□□□□□ -0.29
CPSF1-208ENST00000532560 PRR14LQ5THK1 2151 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 RPL36A-HNRNPH2H7BZ11 118 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 UPK3AO75631 287 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 TSPAN19P0C672 248 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 RHCEP18577 417 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 SH3BGRP55822 239 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-208ENST00000532560 VLDLRP98155 873 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 MTX3Q5HYI7 312 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 C9orf135Q5VTT2 229 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 ZFP1Q6P2D0 407 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 PAMR1Q6UXH9 720 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 LINGO2Q7L985 606 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 RNF113BQ8IZP6 322 aaKnown RBP13.21□□□□□ -0.29
CPSF1-208ENST00000532560 ACOT11Q8WXI4 607 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-208ENST00000532560 NINJ1Q92982 152 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 PLPPR2Q96GM1 343 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 PYURFQ96I23 114 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 LRR1Q96L50 414 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 NMNAT1Q9HAN9 279 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-208ENST00000532560 MED29Q9NX70 200 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 ACTR3BQ9P1U1 418 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 EDARQ9UNE0 448 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 FAM32AQ9Y421 112 aaKnown RBP13.21□□□□□ -0.29
CPSF1-208ENST00000532560 SLC25A15Q9Y619 301 aa13.21□□□□□ -0.29
CPSF1-208ENST00000532560 ANKRD17O75179 2603 aaKnown RBP13.21□□□□□ -0.3
CPSF1-208ENST00000532560 SPG11Q96JI7 2443 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 A0A1W2PRQ8 180 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 SLC35F4A4IF30 521 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 A6NHS1 94 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 C11orf98E9PRG8 122 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 RNF13O43567 381 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 SERPINI2O75830 405 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 H1F0P07305 194 aaKnown RBP13.2□□□□□ -0.3
CPSF1-208ENST00000532560 ITGA2P17301 1181 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 FUT1P19526 365 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 HOXC12P31275 282 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 ROR2Q01974 943 aaKnown RBP13.2□□□□□ -0.3
CPSF1-208ENST00000532560 FOXD4Q12950 439 aaPredicted RBP13.2□□□□□ -0.3
CPSF1-208ENST00000532560 DGCR6Q14129 220 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 NCMAPQ5T1S8 102 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 HMBOX1Q6NT76 420 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms