RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 STARP49675 285 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 DIO1P49895 249 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 RPS6KA3P51812 740 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 CRISP1P54107 249 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 CLDN15P56746 228 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 NUP107P57740 925 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 RPS3AP61247 264 aaKnown RBP6.62□□□□□ -1.35
CD44-228ENST00000528455 CDK5Q00535 292 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 NPRL3Q12980 569 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 MYBPHQ13203 477 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 SLC35F1Q5T1Q4 408 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 FOXB2Q5VYV0 432 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 TTC23Q5W5X9 447 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 ARHGAP11AQ6P4F7 1023 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 SMARCD3Q6STE5 483 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 KLHL17Q6TDP4 642 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 FAM180AQ6UWF9 173 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 H1FNTQ75WM6 255 aaPredicted RBP6.62□□□□□ -1.35
CD44-228ENST00000528455 P3H2Q8IVL5 708 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 PM20D2Q8IYS1 436 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 DHRSXQ8N5I4 330 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 C10orf53Q8N6V4 93 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 LRRC17Q8N6Y2 441 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 SCAIQ8N9R8 606 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 ADPRHL1Q8NDY3 354 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 ATP6V1C2Q8NEY4 427 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 OR9Q2Q8NGE9 314 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 OR5J2Q8NH18 312 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 PFN4Q8NHR9 129 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 ABHD4Q8TB40 342 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 CPT1CQ8TCG5 803 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 OSTF1Q92882 214 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 SARAFQ96BY9 339 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 ADGRG7Q96K78 797 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 KLHL15Q96M94 604 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 OR5B2Q96R09 309 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 NIPSNAP1Q9BPW8 284 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 NAA11Q9BSU3 229 aaPredicted RBP6.62□□□□□ -1.35
CD44-228ENST00000528455 OR11A1Q9GZK7 315 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 KRT84Q9NSB2 600 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 FAM118AQ9NWS6 357 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 SMPD3Q9NY59 655 aaPredicted RBP6.62□□□□□ -1.35
CD44-228ENST00000528455 TAS2R5Q9NYW4 299 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 KIF17Q9P2E2 1029 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 SLC6A5Q9Y345 797 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 ZNF407Q9C0G0 2248 aa6.62□□□□□ -1.35
CD44-228ENST00000528455 SPENQ96T58 3664 aaKnown RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 RELNP78509 3460 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 HECTD1Q9ULT8 2610 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 LOC100130705A0A1B0GUX0 176 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 NPIPA5E9PKD4 350 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 E9PQ18 207 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 MS4A18H0YCH9 400 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 BLOC1S5-TXNDC5H3BN57 136 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 PLPP3O14495 311 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 BCKDKO14874 412 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 PRODHO43272 600 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 APEHP13798 732 aaKnown RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 POU3F2P20265 443 aaPredicted RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 IGFBP5P24593 272 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 SFTPDP35247 375 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 HSPA13P48723 471 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 SUCLG1P53597 346 aaKnown RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 CLDN18P56856 261 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 OR2B6P58173 313 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 PMP22Q01453 160 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 PMS2P3Q13401 168 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 FHL1Q13642 323 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 KIR3DS1Q14943 382 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 PTGES3Q15185 160 aaKnown RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 SGCBQ16585 318 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 CTU2Q2VPK5 515 aaKnown RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 MS4A18Q3C1V0 323 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 HBMQ6B0K9 141 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 TMEM225Q6GV28 225 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 PAQR6Q6TCH4 344 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 DPY19L2P2Q6ZN68 376 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 CHMP1BQ7LBR1 199 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 SLC46A3Q7Z3Q1 461 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 PXKQ7Z7A4 578 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 GGNQ86UU5 652 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 CCDC103Q8IW40 242 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 GHDCQ8N2G8 530 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 CISD2Q8N5K1 135 aaKnown RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 ZNF555Q8NEP9 628 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 OR51A7Q8NH64 312 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 OR2V1Q8NHB1 315 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 ZPLD1Q8TCW7 415 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 TRUB1Q8WWH5 349 aaKnown RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 TFAP2CQ92754 450 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 CPNE4Q96A23 557 aaPredicted RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 SLC25A36Q96CQ1 311 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 SNRNP40Q96DI7 357 aaKnown RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 ZHX1-C8orf76Q96EF9 292 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 WDYHV1Q96HA8 205 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 GPR137Q96N19 417 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 MOGAT1Q96PD6 335 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 SF3B5Q9BWJ5 86 aaKnown RBP6.61□□□□□ -1.35
CD44-228ENST00000528455 GABARAPL3Q9BY60 117 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 SLC6A15Q9H2J7 730 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms