RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SLC7A2P52569 658 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 CDH11P55287 796 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 LIPEQ05469 1076 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 MSMPQ1L6U9 139 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 MMEL1Q495T6 779 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 HSP90B2PQ58FF3 399 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 LRFN4Q6PJG9 635 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 Q71RC1 249 aaPredicted RBP9.28□□□□□ -0.92
CD44-227ENST00000528086 SPATA21Q7Z572 469 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 RBM15BQ8NDT2 890 aaKnown RBP9.28□□□□□ -0.92
CD44-227ENST00000528086 OR2T12Q8NG77 320 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 RP9Q8TA86 221 aaKnown RBP9.28□□□□□ -0.92
CD44-227ENST00000528086 FGFBP3Q8TAT2 258 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 MAGEE2Q8TD90 523 aaPredicted RBP9.28□□□□□ -0.92
CD44-227ENST00000528086 TMEM255BQ8WV15 326 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 TMEM171Q8WVE6 324 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 GRIP2Q9C0E4 1043 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 CRLF2Q9HC73 371 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 NGBQ9NPG2 151 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 B3GNT2Q9NY97 397 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 CORINQ9Y5Q5 1042 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 SONP18583 2426 aaKnown RBP9.27□□□□□ -0.92
CD44-227ENST00000528086 A0A096LNT2 108 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 ELOVL7A1L3X0 281 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 ZNF587BE7ETH6 402 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 J3KTA2 159 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 LY6G6DO95868 133 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 INHBBP09529 407 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 PTAFRP25105 342 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 LSP1P33241 339 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 TTKP33981 857 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 ATP5J2P56134 94 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 PRPS1P60891 318 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 NCALDP61601 193 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 RPS4XP62701 263 aaKnown RBP9.27□□□□□ -0.93
CD44-227ENST00000528086 POU3F1Q03052 451 aaPredicted RBP9.27□□□□□ -0.93
CD44-227ENST00000528086 HGFACQ04756 655 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 PUDPQ08623 228 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 ZP4Q12836 540 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 PMS2P3Q13401 168 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 TNK1Q13470 666 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 CAMK2DQ13557 499 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 MAPRE2Q15555 327 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 CEACAM16Q2WEN9 425 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 INTS11Q5TA45 600 aaKnown RBP9.27□□□□□ -0.93
CD44-227ENST00000528086 CARD17Q5XLA6 110 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 TMEM108Q6UXF1 575 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 HACD2Q6Y1H2 254 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 ZNF627Q7L945 461 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 PXKQ7Z7A4 578 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 MEX3DQ86XN8 651 aaKnown RBP9.27□□□□□ -0.93
CD44-227ENST00000528086 PCYOX1LQ8NBM8 494 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 OR5J2Q8NH18 312 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 RNF217Q8TC41 542 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 HTRA1Q92743 480 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 TMEM54Q969K7 222 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 NMD3Q96D46 503 aaKnown RBP9.27□□□□□ -0.93
CD44-227ENST00000528086 C18orf12Q96KH6 178 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 SH3GL1Q99961 368 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 GID8Q9NWU2 228 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 ABCD2Q9UBJ2 740 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 RIMS3Q9UJD0 308 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 SLC13A4Q9UKG4 626 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 MOKQ9UQ07 419 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 AMDHD2Q9Y303 409 aa9.27□□□□□ -0.93
CD44-227ENST00000528086 C11orf98E9PRG8 122 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 M0R3G1 203 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 SLC43A1O75387 559 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 MT-ATP6P00846 226 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 IGKV3-15P01624 115 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 CECR9P0C854 216 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 IFNGR1P15260 489 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 NCK1P16333 377 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 ZNF26P17031 533 aaPredicted RBP9.26□□□□□ -0.93
CD44-227ENST00000528086 ACVR1BP36896 505 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 YAP1P46937 504 aaKnown RBP9.26□□□□□ -0.93
CD44-227ENST00000528086 RIPPLY3P57055 190 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 SELENOWP63302 87 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 C1DQ13901 141 aaKnown RBP9.26□□□□□ -0.93
CD44-227ENST00000528086 IQCCQ4KMZ1 466 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 LRRC23Q53EV4 343 aaPredicted RBP9.26□□□□□ -0.93
CD44-227ENST00000528086 ERICH5Q6P6B1 374 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 ANKRD16Q6P6B7 361 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 DEF8Q6ZN54 512 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 PIGWQ7Z7B1 504 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 UEVLDQ8IX04 471 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 FAM86B1Q8N7N1 296 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 MAPK1IP1LQ8NDC0 245 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 ANKK1Q8NFD2 765 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 MOSPD2Q8NHP6 518 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 GTPBP3Q969Y2 492 aaKnown RBP9.26□□□□□ -0.93
CD44-227ENST00000528086 POM121Q96HA1 1249 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 MPP4Q96JB8 637 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 LRR1Q96L50 414 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 SEPHS2Q99611 448 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 EPYCQ99645 322 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 DHRS9Q9BPW9 319 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 MRPL13Q9BYD1 178 aaKnown RBP9.26□□□□□ -0.93
CD44-227ENST00000528086 FKRPQ9H9S5 495 aa9.26□□□□□ -0.93
CD44-227ENST00000528086 IGKV1D-43A0A0B4J1Z2 117 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms