RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 HSF1Q00613 529 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 LGALS3BPQ08380 585 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 IRF3Q14653 427 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 TBCEQ15813 527 aaPredicted RBP18.84■□□□□ 0.61
VPS28-208ENST00000527797 GPR141Q7Z602 305 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 ADCK1Q86TW2 530 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 FAM109AQ8N4B1 249 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 ZNF519Q8TB69 540 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 ZPLD1Q8TCW7 415 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 FAR1Q8WVX9 515 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 RORBQ92753 470 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 NAA11Q9BSU3 229 aaPredicted RBP18.84■□□□□ 0.61
VPS28-208ENST00000527797 NMNAT2Q9BZQ4 307 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 NPIPA1Q9UND3 350 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 EXOGQ9Y2C4 368 aaKnown RBP18.84■□□□□ 0.61
VPS28-208ENST00000527797 PCDHGA9Q9Y5G4 932 aaKnown RBP18.84■□□□□ 0.61
VPS28-208ENST00000527797 NOX1Q9Y5S8 564 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 CCDC182A6NF36 153 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 NPIPB13A6NJU9 1138 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 ZNF99A8MXY4 864 aaPredicted RBP18.83■□□□□ 0.61
VPS28-208ENST00000527797 NPIPB4C9JG80 1138 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 EIF1AYO14602 144 aaKnown RBP18.83■□□□□ 0.61
VPS28-208ENST00000527797 BCL10O95999 233 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 GYPBP06028 91 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 SLC25A1P53007 311 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 CLDN20P56880 219 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 POU3F1Q03052 451 aaPredicted RBP18.83■□□□□ 0.61
VPS28-208ENST00000527797 SLC10A1Q14973 349 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 PON3Q15166 354 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 RNLSQ5VYX0 342 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 IGFL3Q6UXB1 125 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 SLC35D2Q76EJ3 337 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 UEVLDQ8IX04 471 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 FCGR1BQ92637 280 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 MUL1Q969V5 352 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 ZHX1-C8orf76Q96EF9 292 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 CRELD1Q96HD1 420 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 OXGR1Q96P68 337 aa18.83■□□□□ 0.61
VPS28-208ENST00000527797 SMIM31A0A1B0GVY4 71 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 A6NIZ1 184 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 DNPH1O43598 174 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 APOL3O95236 402 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 ADRB1P08588 477 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 ADRA2AP08913 450 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 IFNGR1P15260 489 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 TTKP33981 857 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 RAP1BP61224 184 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 RAP1AP62834 184 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 RAB39AQ14964 217 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 SLC35D3Q5M8T2 416 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 PDSS1Q5T2R2 415 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 LCN1P1Q5VSP4 162 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 FAM205BPQ63HN1 556 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 HBMQ6B0K9 141 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 GGNQ86UU5 652 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 KISS1RQ969F8 398 aaPredicted RBP18.82■□□□□ 0.6
VPS28-208ENST00000527797 SNX18Q96RF0 628 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 FAM192AQ9GZU8 254 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 SLC6A15Q9H2J7 730 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 ACKR4Q9NPB9 350 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 RPRD1BQ9NQG5 326 aaKnown RBP18.82■□□□□ 0.6
VPS28-208ENST00000527797 ASB6Q9NWX5 421 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 HAO2Q9NYQ3 351 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 B3GAT1Q9P2W7 334 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 TNFRSF10DQ9UBN6 386 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 RASD1Q9Y272 281 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 LOC102725191A0A1B0GVB3 256 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 SPI1P17947 270 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 AGFG1P52594 562 aaKnown RBP18.82■□□□□ 0.6
VPS28-208ENST00000527797 CARD18P57730 90 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 RAC3P60763 192 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 H3F3AP84243 136 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 C1DQ13901 141 aaKnown RBP18.82■□□□□ 0.6
VPS28-208ENST00000527797 MELKQ14680 651 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 B3GLCTQ6Y288 498 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 B3GNT6Q6ZMB0 384 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 LRRC69Q6ZNQ3 347 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 GPAT4Q86UL3 456 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 UBQLNLQ8IYU4 475 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 OR51G2Q8NGK0 314 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 OR2V1Q8NHB1 315 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 FAM122AQ96E09 287 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 CHCHD3Q9NX63 227 aaKnown RBP18.82■□□□□ 0.6
VPS28-208ENST00000527797 TAS2R16Q9NYV7 291 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 ERGIC3Q9Y282 383 aa18.82■□□□□ 0.6
VPS28-208ENST00000527797 ZNF814B7Z6K7 855 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 H0YC42 278 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 H7C1C5 153 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 K7ENP7 123 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 INMTO95050 263 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 MYL12AP19105 171 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 GSTT1P30711 240 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 CD97P48960 835 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 SUCLG1P53597 346 aaKnown RBP18.81■□□□□ 0.6
VPS28-208ENST00000527797 LCN6P62502 163 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 DBPQ10586 325 aaPredicted RBP18.81■□□□□ 0.6
VPS28-208ENST00000527797 POU4F2Q12837 409 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 UBE2UQ5VVX9 321 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 BORAQ6PGQ7 559 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 INO80CQ6PI98 192 aaPredicted RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms