RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 MFFQ9GZY8 342 aa3.09□□□□□ -1.91
CD44-223ENST00000526553 FOLH1BQ9HBA9 442 aa3.09□□□□□ -1.91
CD44-223ENST00000526553 THUMPD1Q9NXG2 353 aaKnown RBP3.09□□□□□ -1.91
CD44-223ENST00000526553 SLC7A8Q9UHI5 535 aa3.09□□□□□ -1.91
CD44-223ENST00000526553 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.09□□□□□ -1.92
CD44-223ENST00000526553 CNTLNQ9NXG0 1405 aa3.09□□□□□ -1.92
CD44-223ENST00000526553 PRXQ9BXM0 1461 aa3.09□□□□□ -1.92
CD44-223ENST00000526553 CEP170BQ9Y4F5 1589 aaPredicted RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 ZNF142P52746 1687 aaPredicted RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 KIDINS220Q9ULH0 1771 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 A0A1W2PPV9 198 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 PINLYPA6NC86 204 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 CASQ2O14958 399 aaPredicted RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 HCRTR1O43613 425 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 ZNF861PO60384 105 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 LGI1O95970 557 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 MMP1P03956 469 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 PABPC4LP0CB38 370 aaKnown RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 KITLGP21583 273 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 CHMLP26374 656 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 RDXP35241 583 aaKnown RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 KPNA2P52292 529 aaKnown RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 KCNJ2P63252 427 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 BCL2L1Q07817 233 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 ARHGAP19Q14CB8 494 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 CCDC14Q49A88 953 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 UQCC3Q6UW78 93 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 IGFL2Q6UWQ7 119 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 PSTKQ8IV42 348 aaKnown RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 FTMTQ8N4E7 242 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 TPRX1Q8N7U7 411 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 BBOF1Q8ND07 529 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 OR7G2Q8NG99 324 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 OR4F6Q8NGB9 312 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 GPR151Q8TDV0 419 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 ANKRD49Q8WVL7 239 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 SLC38A4Q969I6 547 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.08□□□□□ -1.92
CD44-223ENST00000526553 C12orf42Q96LP6 360 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 NOL4LQ96MY1 436 aaPredicted RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 SMIM14Q96QK8 99 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 TGS1Q96RS0 853 aaKnown RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 KLHDC3Q9BQ90 382 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 HES7Q9BYE0 225 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 SUDS3Q9H7L9 328 aaPredicted RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 NUP50Q9UKX7 468 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 STARD10Q9Y365 291 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 CSDC2Q9Y534 153 aaKnown RBP3.08□□□□□ -1.92
CD44-223ENST00000526553 FANCIQ9NVI1 1328 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 CLIP1P30622 1438 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 PTPRKQ15262 1439 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 SHANK2Q9UPX8 1470 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 CPS1P31327 1500 aa3.08□□□□□ -1.92
CD44-223ENST00000526553 IGHV1OR21-1A0A087WYE8 117 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 TRBV11-1A0A0K0K1C0 115 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 WRBO00258 174 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 DYNC1I1O14576 645 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 DNALI1O14645 258 aaPredicted RBP3.07□□□□□ -1.92
CD44-223ENST00000526553 CASC3O15234 703 aaKnown RBP3.07□□□□□ -1.92
CD44-223ENST00000526553 PSTPIP1O43586 416 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 CDH16O75309 829 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 FGF1P05230 155 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 SERPIND1P05546 499 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 KLK3P07288 261 aaPredicted RBP3.07□□□□□ -1.92
CD44-223ENST00000526553 ASGR1P07306 291 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 HOXC4P09017 264 aaPredicted RBP3.07□□□□□ -1.92
CD44-223ENST00000526553 OR8U8P0C7N1 319 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 NR2C1P13056 603 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 TBPP20226 339 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 MDKP21741 143 aaPredicted RBP3.07□□□□□ -1.92
CD44-223ENST00000526553 PRDX3P30048 256 aaKnown RBP3.07□□□□□ -1.92
CD44-223ENST00000526553 FDFT1P37268 417 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 BTDP43251 543 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 BIDP55957 195 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 C21orf59P57076 290 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 RGS8P57771 180 aaPredicted RBP3.07□□□□□ -1.92
CD44-223ENST00000526553 ENPEPQ07075 957 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 TGM3Q08188 693 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 IL18Q14116 193 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 NSUN5P1Q3KNT7 163 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 VPS26BQ4G0F5 336 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 PLA2G4DQ86XP0 818 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 MFSD6LQ8IWD5 586 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 GTPBP8Q8N3Z3 284 aaPredicted RBP3.07□□□□□ -1.92
CD44-223ENST00000526553 RNF175Q8N4F7 328 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 FNDC5Q8NAU1 212 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 OR4K14Q8NGD5 310 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 SLC22A8Q8TCC7 542 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 BRSK1Q8TDC3 778 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 PYROXD1Q8WU10 500 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 RNF138Q8WVD3 245 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 DNAJA4Q8WW22 397 aaPredicted RBP3.07□□□□□ -1.92
CD44-223ENST00000526553 TM4SF19Q96DZ7 209 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 PGLYRP4Q96LB8 373 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 ZNF578Q96N58 590 aaPredicted RBP3.07□□□□□ -1.92
CD44-223ENST00000526553 OXGR1Q96P68 337 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 PANX2Q96RD6 677 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 RNF126Q9BV68 326 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 TMEM185BQ9H7F4 350 aa3.07□□□□□ -1.92
CD44-223ENST00000526553 KCNIP3Q9Y2W7 256 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms