RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 UBE2J2Q8N2K1 259 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 ZNF808Q8N4W9 903 aaPredicted RBP13.28□□□□□ -0.28
NUP54-213ENST00000513352 FAM26EQ8N5C1 309 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 OR52L1Q8NGH7 329 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 ITLN2Q8WWU7 325 aaPredicted RBP13.28□□□□□ -0.28
NUP54-213ENST00000513352 APH1AQ96BI3 265 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 STARD4Q96DR4 205 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 CIB1Q99828 191 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 EMC6Q9BV81 110 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 DGCR6LQ9BY27 220 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 POLDIP3Q9BY77 421 aaKnown RBP13.28□□□□□ -0.28
NUP54-213ENST00000513352 PIGMQ9H3S5 423 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 EGLN3Q9H6Z9 239 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 TBC1D23Q9NUY8 699 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 PARPBPQ9NWS1 579 aa13.28□□□□□ -0.28
NUP54-213ENST00000513352 FREM1Q5H8C1 2179 aa13.27□□□□□ -0.28
NUP54-213ENST00000513352 LOC102725191A0A1B0GVB3 256 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 NKX2-6A6NCS4 301 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 ZNF726A6NNF4 738 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 PDLIM1O00151 329 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 KRT33AO76009 404 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 BCL10O95999 233 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 IGHV3-9P01782 118 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 ANPEPP15144 967 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 SLC6A6P31641 620 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 SELENOPP49908 381 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 DAP3P51398 398 aaKnown RBP13.27□□□□□ -0.29
NUP54-213ENST00000513352 ERVK-25P63136 954 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 SLC25A35Q3KQZ1 300 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 ANKRD34AQ69YU3 496 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 ZNF620Q6ZNG0 422 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 ZIC4Q8N9L1 334 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 RELL2Q8NC24 303 aaPredicted RBP13.27□□□□□ -0.29
NUP54-213ENST00000513352 SSC4DQ8WTU2 575 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 TMEM45BQ96B21 275 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 TXNDC15Q96J42 360 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 SAMD8Q96LT4 415 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 KATNB1Q9BVA0 655 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 OR52D1Q9H346 318 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 SMURF2Q9HAU4 748 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 CDH10Q9Y6N8 788 aa13.27□□□□□ -0.29
NUP54-213ENST00000513352 SLC35F4A4IF30 521 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 H3BN98 237 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 PTP4A3O75365 173 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 SLC43A1O75387 559 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 PPP1R3DO95685 299 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 TSPAN19P0C672 248 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 ZNF26P17031 533 aaPredicted RBP13.26□□□□□ -0.29
NUP54-213ENST00000513352 POU1F1P28069 291 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 OR3A2P47893 321 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 CAMK2DQ13557 499 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 FHL1Q13642 323 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 CACNA1CQ13936 2221 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 ACKR1Q16570 336 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 CLEC12AQ5QGZ9 265 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 RPL13AP3Q6NVV1 102 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 KLHL17Q6TDP4 642 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 TFAP2EQ6VUC0 442 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 THSD4Q6ZMP0 1018 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 RASSF6Q6ZTQ3 369 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 HDDC2Q7Z4H3 204 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 KIF18BQ86Y91 864 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 ZNF610Q8N9Z0 462 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 TEX47Q8TBZ9 253 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 IFT27Q9BW83 186 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 FANCFQ9NPI8 374 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 KCNJ16Q9NPI9 418 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 PAPOLBQ9NRJ5 636 aaKnown RBP13.26□□□□□ -0.29
NUP54-213ENST00000513352 KRT84Q9NSB2 600 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 UPB1Q9UBR1 384 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 PRSS50Q9UI38 385 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 RCE1Q9Y256 329 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 IER3IP1Q9Y5U9 82 aa13.26□□□□□ -0.29
NUP54-213ENST00000513352 ALPK2Q86TB3 2170 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 MSTNO14793 375 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 CLDN14O95500 239 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 CD14P08571 375 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 IGFBP1P08833 259 aaPredicted RBP13.25□□□□□ -0.29
NUP54-213ENST00000513352 CD8BP10966 210 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 AGAP20933 346 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 IGFBP5P24593 272 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 EDNRAP25101 427 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 NTF4P34130 210 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 ACVR1BP36896 505 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 ASCL1P50553 236 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 DAPP51397 102 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 RPS6KA3P51812 740 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 CLRN1P58418 232 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 FXYD6P3P58550 94 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 RPL27P61353 136 aaKnown RBP13.25□□□□□ -0.29
NUP54-213ENST00000513352 SRSF1Q07955 248 aaKnown RBP eCLIP13.25□□□□□ -0.297e-7■□□□□ 8.2
NUP54-213ENST00000513352 COX10Q12887 443 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 CDSNQ15517 529 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 TRIP10Q15642 601 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 RFX4Q33E94 735 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 FAHD1Q6P587 224 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 DPY19L2P2Q6ZN68 376 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 GPR137CQ8N3F9 429 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 LRRC75AQ8NAA5 344 aa13.25□□□□□ -0.29
NUP54-213ENST00000513352 OR6N1Q8NGY5 312 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms