RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CDC42EP2O14613 210 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 NR2C1P13056 603 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 SDHBP21912 280 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 HTR2CP28335 458 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC6A1P30531 599 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 TMEM31Q5JXX7 168 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 C1orf189Q5VU69 101 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 TMEM244Q5VVB8 128 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 OR5H2Q8NGV7 314 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 CNTNAP3BQ96NU0 1288 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 ABHD1Q96SE0 405 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 ELF4Q99607 663 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 KLK11Q9UBX7 282 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 PIAS3Q9Y6X2 628 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 A0A1B0GUH1 482 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 TMEM269A0A1B0GVZ9 245 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 M0QYG6 137 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 PLPP2O43688 288 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 OR2T1O43869 369 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 ITGB8P26012 769 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 ARHGDIBP52566 201 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 GPNMBQ14956 572 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 MEP1BQ16820 701 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 FAM3CQ92520 227 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 ASB16Q96NS5 453 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 TEX101Q9BY14 249 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 ERVMER34-1Q9H9K5 563 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 NEUROG3Q9Y4Z2 214 aa7.73□□□□□ -1.17
LIMCH1-216ENST00000512820 PRAMEF25A6NGN4 478 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 SCGNO76038 276 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 CEACAM5P06731 702 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 IL32P24001 234 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 ADH6P28332 368 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 TLE3Q04726 772 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 AANATQ16613 207 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 MED25Q71SY5 747 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 ZSCAN1Q8NBB4 408 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 CD300LFQ8TDQ1 290 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 FOXRED1Q96CU9 486 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 ZC3HAV1LQ96H79 300 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 BMFQ96LC9 184 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 TSPAN10Q9H1Z9 355 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 ZMAT3Q9HA38 289 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 SIGLEC7Q9Y286 467 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 VSTM2BA6NLU5 285 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 E9PI62 339 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 HOXB3P14651 431 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 DCTDP32321 178 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 LIMS1P48059 325 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 ARRB1P49407 418 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 VEGFBP49765 207 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 CBFBQ13951 182 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 ST3GAL2Q16842 350 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 PLPP7Q8NBV4 271 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 C17orf47Q8NEP4 570 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 OR1J4Q8NGS1 313 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 PAQR8Q8TEZ7 354 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 CHAC2Q8WUX2 184 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 PGAM5Q96HS1 289 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF700Q9H0M5 742 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 APMAPQ9HDC9 416 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 KCNIP3Q9Y2W7 256 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 MYO9BQ13459 2157 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 POM121BA6NF01 834 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 PRAMEF26H0Y7S4 382 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 WNT1P04628 370 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 HEXBP07686 556 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 TPT1P13693 172 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 UBE2MP61081 183 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 CMIPQ8IY22 773 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 PXT1Q8NFP0 134 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 LRFN5Q96NI6 719 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 TSSK2Q96PF2 358 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 CDC6Q99741 560 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 VRK1Q99986 396 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 C6orf106Q9H6K1 298 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 EVA1BQ9NVM1 165 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 TBX21Q9UL17 535 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 SCN4AP35499 1836 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 RGPD3A6NKT7 1758 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 RGPD4Q7Z3J3 1758 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 ARID1BQ8NFD5 2236 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 LOC100289279A0A1B0GTE1 492 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 A6NIZ1 184 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 DOK2O60496 412 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 CISD3P0C7P0 127 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 RAB3AP20336 220 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 HOXD11P31277 338 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 TAS2R31P59538 309 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 RAP1BP61224 184 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 RAP1AP62834 184 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 VAMP2P63027 116 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 UBXN2BQ14CS0 331 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 UBE3DQ7Z6J8 389 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 MAN2C1Q9NTJ4 1040 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 PPP4R1LQ9P1A2 415 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 GMEB2Q9UKD1 530 aa7.72□□□□□ -1.17
LIMCH1-216ENST00000512820 PLXNB2O15031 1838 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 A0A087WV62 115 aa7.71□□□□□ -1.17
LIMCH1-216ENST00000512820 CPED1A4D0V7 1026 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms