RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 GPR143P51810 404 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 C1orf61Q13536 156 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 PCGF3Q3KNV8 242 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 ITPRIPL2Q3MIP1 535 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 DND1Q8IYX4 353 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 OR51D1Q8NGF3 324 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 OR4D10Q8NGI6 311 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 OR8S1Q8NH09 359 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 BAHD1Q8TBE0 780 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 HAVCR1Q96D42 359 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 SCARF2Q96GP6 870 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 ARL6Q9H0F7 186 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 TMEM138Q9NPI0 162 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 MRM2Q9UI43 246 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 REV3LO60673 3130 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 CEP290O15078 2479 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 OR5K3A6NET4 321 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 ACOT7O00154 380 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 SMAD9O15198 467 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 VSIG10L2P0DP72 767 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 NTSR1P30989 418 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 PTGS2P35354 604 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 GRK6P43250 576 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 MELKQ14680 651 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 TUSC1Q2TAM9 212 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 LINC00114Q6XXX2 140 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 DPY19L4Q7Z388 723 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 JAZF1Q86VZ6 243 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 OR6N2Q8NGY6 317 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 DVL3Q92997 716 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 RNF166Q96A37 237 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 MRPL48Q96GC5 212 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 MS4A7Q9GZW8 240 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 PLEKHA1Q9HB21 404 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 GDE1Q9NZC3 331 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 ERVK-19Q9WJR5 959 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 NAP1L6A6NFF2 107 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 ELOA3DA6NLF2 546 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 RBBP9O75884 186 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 KDM4BO94953 1096 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 CELA2BP08218 269 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 ST6GAL1P15907 406 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 EFNB2P52799 333 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 GGTLC2Q14390 218 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 ALG11Q2TAA5 492 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 ELOA3BQ3SY89 546 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 FAM220AQ7Z4H9 259 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 GRAMD2AQ8IUY3 354 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 ELOA3Q8NG57 546 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 TMEM106AQ96A25 262 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 C3orf49Q96BT1 292 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 GPN1Q9HCN4 374 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 Q9N2J8 555 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 ZNF337Q9Y3M9 751 aa8.44□□□□□ -1.06
LIMCH1-215ENST00000512632 MPDZO75970 2070 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 PTPRSQ13332 1948 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 ARPC3O15145 178 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 OIP5O43482 229 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 IFNA16P05015 189 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 LTBQ06643 244 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 Q499Y3 187 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 CBLN3Q6UW01 205 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 LSM14AQ8ND56 463 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 KLHDC3Q9BQ90 382 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 MFRPQ9BY79 579 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 SDHAF2Q9NX18 166 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 CPNE7Q9UBL6 633 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 TCRBV16S1A1N1A0A5B0 115 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 SERINC4A6NH21 518 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 C2orf74A8MZ97 194 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 UBL4AP11441 157 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 CENPAP49450 140 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 RAP2BP61225 183 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 ALKBH1Q13686 389 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 LRRC69Q6ZNQ3 347 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 BPHLQ86WA6 291 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 AVL9Q8NBF6 648 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 NSMAFQ92636 917 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 PPP1R14AQ96A00 147 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 VSTM2LQ96N03 204 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 NMNAT2Q9BZQ4 307 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 WDR76Q9H967 626 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 TRAV18A0A075B6X5 111 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 UPK3AO75631 287 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 NDUFB6O95139 128 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 KLF8O95600 359 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 RAB40ALP0C0E4 278 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 MAOAP21397 527 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 ILF3Q12906 894 aaKnown RBP eCLIP8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 CSRP2Q16527 193 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 NHLRC3Q5JS37 347 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 C11orf88Q6PI97 169 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 SEZ6L2Q6UXD5 910 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 PRSS42Q7Z5A4 293 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 PHOSPHO1Q8TCT1 267 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 RAB40AQ8WXH6 277 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 PHYHIPQ92561 330 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 RSC1A1Q92681 617 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 MIB2Q96AX9 1013 aa8.43□□□□□ -1.06
LIMCH1-215ENST00000512632 CHST6Q9GZX3 395 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms