RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 MCATQ8IVS2 390 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 EXD3Q8N9H8 876 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 C16orf52Q8NHV5 167 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 LRRC20Q8TCA0 184 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SHDQ96IW2 340 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 Q96M85 177 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GPR174Q9BXC1 333 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 DLL4Q9NR61 685 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 U3KQ87 197 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TDRD6O60522 2096 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 A0A1B0GTQ1 180 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 A0A1B0GVT2 93 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 H3BUI4 141 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 AIPO00170 330 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PRAMEF2O60811 474 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RAF1P04049 648 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PGDP52209 483 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SNTA1Q13424 505 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CLVS2Q5SYC1 327 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SFRP4Q6FHJ7 346 aaPredicted RBP14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SEZ6L2Q6UXD5 910 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 FCRLAQ7L513 359 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 LINGO2Q7L985 606 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PIAS4Q8N2W9 510 aaPredicted RBP14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 C19orf47Q8N9M1 422 aaKnown RBP14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 LRRC75AQ8NAA5 344 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZSCAN1Q8NBB4 408 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OR11G2Q8NGC1 345 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OR52I2Q8NH67 350 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ALG12Q9BV10 488 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 C20orf85Q9H1P6 137 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 BEX1Q9HBH7 125 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 HRASLSQ9HDD0 168 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 FLVCR2Q9UPI3 526 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TMEM131Q92545 1883 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 G3V3Q6 166 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CLPSP04118 112 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ATF4P18848 351 aaPredicted RBP14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 FUT7Q11130 342 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 LGALSLQ3ZCW2 172 aaPredicted RBP14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 KLHL26Q53HC5 615 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 LEG1Q6P5S2 330 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 FGD2Q7Z6J4 655 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SLC35F3Q8IY50 421 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF511Q8NB15 262 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF680Q8NEM1 530 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MRPL48Q96GC5 212 aaKnown RBP14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SORCS2Q96PQ0 1159 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 LMF1Q96S06 567 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ACTR6Q9GZN1 396 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PRTFDC1Q9NRG1 225 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ERVK-19Q9WJR5 959 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RCE1Q9Y256 329 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MRPS17Q9Y2R5 130 aaKnown RBP14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 KLHDC2Q9Y2U9 406 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 NPTNQ9Y639 398 aa14.65□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 A0A1B0GVI7 797 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PDCD5O14737 125 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OIP5O43482 229 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PRKNO60260 465 aaPredicted RBP14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SLC22A5O76082 557 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 IGHV4-34P06331 123 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 UQCRC1P31930 480 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 AQP2P41181 271 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 RABIFP47224 123 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CLDN12P56749 244 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PRPS1P60891 318 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 HHEXQ03014 270 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 IKZF1Q13422 519 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 C1orf61Q13536 156 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 FAM122BQ7Z309 247 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TAF8Q7Z7C8 310 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 LUZP2Q86TE4 346 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SERPINA12Q8IW75 414 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF615Q8N8J6 731 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TSTD1Q8NFU3 115 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 DGAT2Q96PD7 388 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TSSK2Q96PF2 358 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SLC19A3Q9BZV2 496 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TSPAN10Q9H1Z9 355 aaPredicted RBP14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OR10A5Q9H207 317 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 EIF3KQ9UBQ5 218 aaKnown RBP14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SLCO1B1Q9Y6L6 691 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 DMXL1Q9Y485 3027 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 GABARAPH6UMI1 98 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 KHNYNO15037 678 aaKnown RBP14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 UPK3AO75631 287 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MAOAP21397 527 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PTH2RP49190 550 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TOR2AQ5JU69 321 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 FAM69AQ5T7M9 428 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 FNDC7Q5VTL7 733 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF595Q8IYB9 648 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF433Q8N7K0 673 aaPredicted RBP14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TMEM105Q8N8V8 129 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 FAM71CQ8NEG0 241 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF524Q96C55 264 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 IFT22Q9H7X7 185 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 NANSQ9NR45 359 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms