RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 DNAJC9-AS1A6NH13 148 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 RPL36A-HNRNPH2H7BZ11 118 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 CFLARO15519 480 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 GUSBP08236 651 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 ALDOCP09972 364 aaKnown RBP14.08□□□□□ -0.16
VIM-208ENST00000497849 G6PDP11413 515 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 SOAT1P35610 550 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 MAP2K6P52564 334 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 NME5P56597 212 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 AVPI1Q5T686 147 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 REP15Q6BDI9 236 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 DOK3Q7L591 496 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 KRTCAP2Q8N6L1 136 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 ZNF837Q96EG3 531 aaPredicted RBP14.08□□□□□ -0.16
VIM-208ENST00000497849 MAELQ96JY0 434 aaKnown RBP14.08□□□□□ -0.16
VIM-208ENST00000497849 OR51I1Q9H343 314 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 C7orf69Q9H7B7 122 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 ATAD3AQ9NVI7 634 aa14.08□□□□□ -0.16
VIM-208ENST00000497849 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.08□□□□□ -0.16
VIM-208ENST00000497849 TROVE2P10155 538 aaKnown RBP eCLIP14.07□□□□□ -0.16
VIM-208ENST00000497849 NAT2P11245 290 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 ZNF35P13682 527 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 GLRXP35754 106 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 IL13RA1P78552 427 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 MVKQ03426 396 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 RBMS3Q6XE24 437 aaKnown RBP14.07□□□□□ -0.16
VIM-208ENST00000497849 HOMEZQ8IX15 550 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 NATD1Q8N6N6 113 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 ANKK1Q8NFD2 765 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 MS4A3Q96HJ5 214 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 SLC35G5Q96KT7 338 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 ELAC2Q9BQ52 826 aaKnown RBP14.07□□□□□ -0.16
VIM-208ENST00000497849 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.07□□□□□ -0.16
VIM-208ENST00000497849 EXD2Q9NVH0 621 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 ADPRHL2Q9NX46 363 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 RYR3Q15413 4870 aa14.07□□□□□ -0.16
VIM-208ENST00000497849 A0A0G2JND7 137 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 PRAMEF27A3QJZ7 478 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 SCN2BO60939 215 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 ZNF432O94892 652 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 VAMP5O95183 116 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 TGDSO95455 350 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 IGHV2-5P01817 119 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 OR12D1P0DN82 309 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 MAGEB1P43366 347 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 GKAP1Q5VSY0 366 aaPredicted RBP14.06□□□□□ -0.16
VIM-208ENST00000497849 RIMKLAQ8IXN7 391 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 CLECL1Q8IZS7 167 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 MIPOL1Q8TD10 442 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 RAB8BQ92930 207 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 ROPN1LQ96C74 230 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 RAB39BQ96DA2 213 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 ZNF75AQ96N20 296 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 PKP2Q99959 881 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 ZNF385DQ9H6B1 395 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 GPR35Q9HC97 309 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 POLE3Q9NRF9 147 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 B3GNT2Q9NY97 397 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 FZR1Q9UM11 496 aa14.06□□□□□ -0.16
VIM-208ENST00000497849 RNF103-CHMP3A0A140T963 221 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 E9PBE3 544 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 FAAHO00519 579 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 CDC14BO60729 498 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 SEC14L2O76054 403 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 RNASE1P07998 156 aaKnown RBP14.05□□□□□ -0.16
VIM-208ENST00000497849 MDKP21741 143 aaPredicted RBP14.05□□□□□ -0.16
VIM-208ENST00000497849 MAPK1P28482 360 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 FXNQ16595 210 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 CEACAM16Q2WEN9 425 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 PIGWQ7Z7B1 504 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 SYT14Q8NB59 555 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 XAGE5Q8WWM1 108 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 ZNF48Q96MX3 618 aaPredicted RBP14.05□□□□□ -0.16
VIM-208ENST00000497849 DUSP26Q9BV47 211 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 TMEM120AQ9BXJ8 343 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 ZMAT3Q9HA38 289 aaKnown RBP14.05□□□□□ -0.16
VIM-208ENST00000497849 TCF7L2Q9NQB0 619 aa14.05□□□□□ -0.16
VIM-208ENST00000497849 NOP53Q9NZM5 478 aaKnown RBP14.05□□□□□ -0.16
VIM-208ENST00000497849 UBDO15205 165 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 FRS3O43559 492 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 SNX3O60493 162 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 CHRM4P08173 479 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 ZNF14P17017 642 aaPredicted RBP14.04□□□□□ -0.16
VIM-208ENST00000497849 GATA3P23771 443 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 GCH1P30793 250 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 CAPZA2P47755 286 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 UFM1P61960 85 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 SRSF4Q08170 494 aaKnown RBP14.04□□□□□ -0.16
VIM-208ENST00000497849 BNIP2Q12982 314 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 SMU1Q2TAY7 513 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 PRAMEF8Q5VWM4 474 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 PRAMEF7Q5VXH5 474 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 OGFOD2Q6N063 350 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 BCL6BQ8N143 479 aaPredicted RBP14.04□□□□□ -0.16
VIM-208ENST00000497849 KDM8Q8N371 416 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 CCDC28BQ9BUN5 200 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 TAPBPLQ9BX59 468 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 AIG1Q9NVV5 245 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 PDP1Q9P0J1 537 aaPredicted RBP14.04□□□□□ -0.16
VIM-208ENST00000497849 KLHL14Q9P2G3 628 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms