RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 GOT1P17174 413 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CALML3P27482 149 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 LAP3P28838 519 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PTPN4P29074 926 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CRABP1P29762 137 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MARCKSP29966 332 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OR1E1P30953 314 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 LCN1P31025 176 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FOXN2P32314 431 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 UGT2B10P36537 528 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 HPCAL1P37235 193 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SPAM1P38567 509 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 NSFP46459 744 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GYG1P46976 350 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OMPP47874 163 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ZFP36L2P47974 494 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ALDH3B2P48448 385 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CSNK1DP48730 415 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PITPNBP48739 271 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CDC34P49427 236 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GBX2P52951 348 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PPP5CP53041 499 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 METAP1P53582 386 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 RAD23AP54725 363 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 AQP4P55087 323 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CDH4P55283 916 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CDH6P55285 790 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GMFBP60983 142 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 RPL26P61254 145 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ESRRGP62508 458 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SKP1P63208 163 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SRPXP78539 464 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FKBP3Q00688 224 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ZFP36L1Q07352 338 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TFCP2Q12800 502 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CDH17Q12864 832 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PDIA2Q13087 525 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FADDQ13158 208 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 APOFQ13790 326 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SELPLGQ14242 412 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GK3PQ14409 553 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GANABQ14697 944 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF846Q147U1 533 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TRAM2Q15035 370 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CHRNA6Q15825 494 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 UAP1Q16222 522 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 RFX4Q33E94 735 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 Q5BKY6 102 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF542PQ5EBM4 170 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 XKR4Q5GH76 650 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OR2B11Q5JQS5 317 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TEX30Q5JUR7 227 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TCHHL1Q5QJ38 904 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 C6orf136Q5SQH8 315 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FAM182AQ5T1J6 154 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PDZK1Q5T2W1 519 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MEDAGQ5VYS4 303 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CENPPQ6IPU0 288 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PMF1Q6P1K2 205 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 C1orf94Q6P1W5 598 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 DCUN1D2Q6PH85 259 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SCIMPQ6UWF3 145 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TFAP2EQ6VUC0 442 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SPNS3Q6ZMD2 512 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 IL17RELQ6ZVW7 336 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 Q71RC1 249 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TMUB2Q71RG4 321 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ARMCX2Q7L311 632 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OTOAQ7RTW8 1153 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PAGE2Q7Z2X7 111 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TIPARPQ7Z3E1 657 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 C16orf62Q7Z3J2 963 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PIWIL3Q7Z3Z3 882 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 HDDC2Q7Z4H3 204 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CPEB2Q7Z5Q1 589 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 S100A7AQ86SG5 101 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 LUZP2Q86TE4 346 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SLC22A16Q86VW1 577 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TGIF2LXQ8IUE1 241 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SNX29P2Q8IUI4 249 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SELENOHQ8IZQ5 122 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SLC34A3Q8N130 599 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OR8H3Q8N146 312 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PYROXD2Q8N2H3 581 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF786Q8N393 782 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TMEM35BQ8NCS4 154 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GMCL1P1Q8NEA9 526 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 DENND6BQ8NEG7 585 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OR5M9Q8NGP3 310 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OR5M1Q8NGP8 315 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OR10J5Q8NHC4 309 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TRMT10AQ8TBZ6 339 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SETD7Q8WTS6 366 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ING5Q8WYH8 240 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MAFIPQ8WZ33 124 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 NSMAFQ92636 917 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PTP4A1Q93096 173 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CPNE4Q96A23 557 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 NTAN1Q96AB6 310 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MCUR1Q96AQ8 359 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms