RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PTH2RP49190 550 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 TGFBR3Q03167 851 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 CAMK2DQ13557 499 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 Q5PR19 223 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 TSEN54Q7Z6J9 526 aaKnown RBP15.84■□□□□ 0.13
COL9A3-214ENST00000490398 MEX3DQ86XN8 651 aaKnown RBP15.84■□□□□ 0.13
COL9A3-214ENST00000490398 C20orf196Q8IYI0 205 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 RNF148Q8N7C7 305 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 SMAP2Q8WU79 429 aaPredicted RBP15.84■□□□□ 0.13
COL9A3-214ENST00000490398 FBXW5Q969U6 566 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 CMTM5Q96DZ9 223 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 BOD1Q96IK1 185 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 SEC61A2Q9H9S3 476 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 DLL4Q9NR61 685 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 CISD1Q9NZ45 108 aaKnown RBP15.84■□□□□ 0.13
COL9A3-214ENST00000490398 RHCGQ9UBD6 479 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 AMDHD2Q9Y303 409 aa15.84■□□□□ 0.13
COL9A3-214ENST00000490398 RPL36A-HNRNPH2H7BZ11 118 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 FFAR1O14842 300 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 ZNF682O95780 498 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 SERPINA1P01009 418 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 IFNA14P01570 189 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 CD8AP01732 235 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 ASAH2BP0C7U1 165 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 FUT1P19526 365 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 CDKN1AP38936 164 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 CDH11P55287 796 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 MELKQ14680 651 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 CEACAM16Q2WEN9 425 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 HMBOX1Q6NT76 420 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 TMEM108Q6UXF1 575 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 PXKQ7Z7A4 578 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 FAM156AQ8NDB6 213 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 TMEM239Q8WW34 195 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 FKRPQ9H9S5 495 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 CRLF2Q9HC73 371 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 MAN2C1Q9NTJ4 1040 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 EGFL7Q9UHF1 273 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 AP3M1Q9Y2T2 418 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 NOX1Q9Y5S8 564 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 ALPK2Q86TB3 2170 aa15.83■□□□□ 0.12
COL9A3-214ENST00000490398 USF3Q68DE3 2245 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 IGHV1-18A0A0C4DH31 117 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 OR6C65A6NJZ3 312 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 GSTA4O15217 222 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 MT-ND1P03886 318 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 IFNGR1P15260 489 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 PTAFRP25105 342 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 BIDP55957 195 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 PRPS1P60891 318 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 ZP4Q12836 540 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 KLHL17Q6TDP4 642 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 CBLL1Q75N03 491 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 ABHD12BQ7Z5M8 362 aaPredicted RBP15.82■□□□□ 0.12
COL9A3-214ENST00000490398 MYPOPQ86VE0 399 aaPredicted RBP15.82■□□□□ 0.12
COL9A3-214ENST00000490398 LRRC75A-AS1Q8N1F1 130 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 GPR137CQ8N3F9 429 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 PIK3C3Q8NEB9 887 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 TMEM171Q8WVE6 324 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 HSH2DQ96JZ2 352 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 KCTD14Q9BQ13 255 aaPredicted RBP15.82■□□□□ 0.12
COL9A3-214ENST00000490398 GSX2Q9BZM3 304 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 SLC19A3Q9BZV2 496 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 NANSQ9NR45 359 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 ZNF701Q9NV72 531 aaPredicted RBP15.82■□□□□ 0.12
COL9A3-214ENST00000490398 ZNF229Q9UJW7 825 aa15.82■□□□□ 0.12
COL9A3-214ENST00000490398 OVOL3O00110 214 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 DYNC1I1O14576 645 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 OR7A10O76100 309 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 UMPSP11172 480 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 ANKRD16Q6P6B7 361 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 SLC22A25Q6T423 547 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 SLC35D2Q76EJ3 337 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 SSX8Q7RTT4 187 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 YTHDF3Q7Z739 585 aaKnown RBP15.81■□□□□ 0.12
COL9A3-214ENST00000490398 CIARTQ8N365 385 aaPredicted RBP15.81■□□□□ 0.12
COL9A3-214ENST00000490398 FAM86B1Q8N7N1 296 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 MOSPD2Q8NHP6 518 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 PRRC1Q96M27 445 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 SMR3AQ99954 134 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 POLR2J2Q9GZM3 115 aaKnown RBP15.81■□□□□ 0.12
COL9A3-214ENST00000490398 POLR2J3Q9H1A7 115 aaKnown RBP15.81■□□□□ 0.12
COL9A3-214ENST00000490398 GSX1Q9H4S2 264 aaPredicted RBP15.81■□□□□ 0.12
COL9A3-214ENST00000490398 ARL2BPQ9Y2Y0 163 aa15.81■□□□□ 0.12
COL9A3-214ENST00000490398 SETD2Q9BYW2 2564 aaPredicted RBP15.8■□□□□ 0.12
COL9A3-214ENST00000490398 ATP6V1G2-DDX39BF2Z307 99 aa15.8■□□□□ 0.12
COL9A3-214ENST00000490398 BLOC1S5-TXNDC5H3BN57 136 aa15.8■□□□□ 0.12
COL9A3-214ENST00000490398 NDUFS7O75251 213 aa15.8■□□□□ 0.12
COL9A3-214ENST00000490398 PRSS23O95084 383 aa15.8■□□□□ 0.12
COL9A3-214ENST00000490398 OR6A2O95222 327 aa15.8■□□□□ 0.12
COL9A3-214ENST00000490398 CELA3BP08861 270 aa15.8■□□□□ 0.12
COL9A3-214ENST00000490398 PAX1P15863 534 aa15.8■□□□□ 0.12
COL9A3-214ENST00000490398 MSX2P35548 267 aaPredicted RBP15.8■□□□□ 0.12
COL9A3-214ENST00000490398 AQP2P41181 271 aa15.8■□□□□ 0.12
COL9A3-214ENST00000490398 RBM34P42696 430 aaKnown RBP15.8■□□□□ 0.12
COL9A3-214ENST00000490398 RPS4XP62701 263 aaKnown RBP15.8■□□□□ 0.12
COL9A3-214ENST00000490398 RUNX1T1Q06455 604 aa15.8■□□□□ 0.12
COL9A3-214ENST00000490398 RPL18Q07020 188 aaKnown RBP15.8■□□□□ 0.12
COL9A3-214ENST00000490398 SHEQ5VZ18 495 aa15.8■□□□□ 0.12
COL9A3-214ENST00000490398 MAGEE2Q8TD90 523 aaPredicted RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms