RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	CSNK2A1	P68400	391 aa	Predicted RBP	10.04	□□□□□ -0.8
APTX-223	ENST00000479656	H3F3A	P84243	136 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	HSF1	Q00613	529 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	POU3F1	Q03052	451 aa	Predicted RBP	10.04	□□□□□ -0.8
APTX-223	ENST00000479656	KRR1	Q13601	381 aa	Known RBP	10.04	□□□□□ -0.8
APTX-223	ENST00000479656	NEDD8	Q15843	81 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	TBR1	Q16650	682 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	HBM	Q6B0K9	141 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	NIPAL3	Q6P499	406 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	PAQR6	Q6TCH4	344 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	ESPNL	Q6ZVH7	1005 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	SHF	Q7M4L6	423 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	PXK	Q7Z7A4	578 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	GPAT4	Q86UL3	456 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	GID4	Q8IVV7	300 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	OR51L1	Q8NGJ5	315 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	ZNRF4	Q8WWF5	429 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	TMIGD2	Q96BF3	282 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	LGALS12	Q96DT0	336 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	UCN2	Q96RP3	112 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	SRXN1	Q9BYN0	137 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	ACKR4	Q9NPB9	350 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	FANCF	Q9NPI8	374 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	BATF3	Q9NR55	127 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	MRPS18A	Q9NVS2	196 aa	Known RBP	10.04	□□□□□ -0.8
APTX-223	ENST00000479656	ASB6	Q9NWX5	421 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	QPCTL	Q9NXS2	382 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	B3GAT1	Q9P2W7	334 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	COMMD3-BMI1	R4GMX3	469 aa		10.04	□□□□□ -0.8
APTX-223	ENST00000479656	TNRC6A	Q8NDV7	1962 aa	Known RBP	10.04	□□□□□ -0.8
APTX-223	ENST00000479656	AQP7P3	A6NL99	342 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	MKRN2OS	H3BPM6	223 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	XKRY	O14609	159 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	CXCL13	O43927	109 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	MRPS14	O60783	128 aa	Known RBP	10.03	□□□□□ -0.8
APTX-223	ENST00000479656	BCL10	O95999	233 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	PIP	P12273	146 aa	Predicted RBP	10.03	□□□□□ -0.8
APTX-223	ENST00000479656	PCMT1	P22061	227 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	ENPP1	P22413	925 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	SLC2A5	P22732	501 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	EIF1AX	P47813	144 aa	Known RBP	10.03	□□□□□ -0.8
APTX-223	ENST00000479656	SRY	Q05066	204 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	ZNF239	Q16600	458 aa	Known RBP	10.03	□□□□□ -0.8
APTX-223	ENST00000479656	NADK2	Q4G0N4	442 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	KLHL22	Q53GT1	634 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	ARMC4	Q5T2S8	1044 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	GTF2IRD2B	Q6EKJ0	949 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	XAF1	Q6GPH4	301 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	NHLRC1	Q6VVB1	395 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	SLC35D2	Q76EJ3	337 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	TRIL	Q7L0X0	811 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	GTF2IRD2	Q86UP8	949 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	SATL1	Q86VE3	508 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	WDFY1	Q8IWB7	410 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	ADPRHL1	Q8NDY3	354 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	OR52I1	Q8NGK6	324 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	ZNF519	Q8TB69	540 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	EXTL1	Q92935	676 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	ABHD17A	Q96GS6	310 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	TMEM80	Q96HE8	168 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	ADGRG7	Q96K78	797 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	OXGR1	Q96P68	337 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	TSSK2	Q96PF2	358 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	NAA11	Q9BSU3	229 aa	Predicted RBP	10.03	□□□□□ -0.8
APTX-223	ENST00000479656	MFRP	Q9BY79	579 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	LDAH	Q9H6V9	325 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	SRA1	Q9HD15	236 aa	Known RBP	10.03	□□□□□ -0.8
APTX-223	ENST00000479656	RPRD1B	Q9NQG5	326 aa	Known RBP	10.03	□□□□□ -0.8
APTX-223	ENST00000479656	MED29	Q9NX70	200 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	TAS2R16	Q9NYV7	291 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	KLHL13	Q9P2N7	655 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656	LIPG	Q9Y5X9	500 aa		10.03	□□□□□ -0.8
APTX-223	ENST00000479656		A0A1W2PNV4	684 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	CCDC182	A6NF36	153 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656		A6NHS1	94 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	FAM171A2	A8MVW0	826 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	NPIPA5	E9PKD4	350 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	TAF4	O00268	1085 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	EIF1B	O60739	113 aa	Known RBP	10.02	□□□□□ -0.8
APTX-223	ENST00000479656	FADS2	O95864	444 aa	Known RBP	10.02	□□□□□ -0.8
APTX-223	ENST00000479656	IGHM	P01871	453 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	ATP6V1E1	P36543	226 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	ALDH3B2	P48448	385 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	LHX2	P50458	406 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	AGFG1	P52594	562 aa	Known RBP	10.02	□□□□□ -0.8
APTX-223	ENST00000479656	TMPRSS3	P57727	454 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	RAC3	P60763	192 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	RUNX1T1	Q06455	604 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	C1D	Q13901	141 aa	Known RBP	10.02	□□□□□ -0.8
APTX-223	ENST00000479656	ZNF169	Q14929	603 aa	Predicted RBP	10.02	□□□□□ -0.8
APTX-223	ENST00000479656	UEVLD	Q8IX04	471 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	PM20D2	Q8IYS1	436 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	OR4F15	Q8NGB8	312 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	OR51G2	Q8NGK0	314 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	OR10D3	Q8NH80	312 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	OR2V1	Q8NHB1	315 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	KISS1R	Q969F8	398 aa	Predicted RBP	10.02	□□□□□ -0.8
APTX-223	ENST00000479656	ABTB1	Q969K4	478 aa	Predicted RBP	10.02	□□□□□ -0.8
APTX-223	ENST00000479656	EMC6	Q9BV81	110 aa		10.02	□□□□□ -0.8
APTX-223	ENST00000479656	NMNAT2	Q9BZQ4	307 aa		10.02	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms