RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ING1Q9UK53 422 aaPredicted RBP10.51□□□□□ -0.73
SQSTM1-206ENST00000466342 SVEP1Q4LDE5 3571 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 IGKV3D-15A0A087WSY6 115 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 AQP7P3A6NL99 342 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF716A6NP11 495 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF724A8MTY0 619 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 hCG_2039718K7EN88 272 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 RAMP1O60894 148 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 MT-ATP6P00846 226 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 BGLAPP02818 100 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 FABP3P05413 133 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 YES1P07947 543 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 ITGA2P17301 1181 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 RHCEP18577 417 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 CCKARP32238 428 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 P2RY4P51582 365 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 SLC16A1P53985 500 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 MFSD13AQ14CX5 517 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 TRAM2Q15035 370 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 EXOC3L2Q2M3D2 409 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 IQCCQ4KMZ1 466 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 TMEM201Q5SNT2 666 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 STAC2Q6ZMT1 411 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 CCDC103Q8IW40 242 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 TUSC5Q8IXB3 177 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF611Q8N823 705 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 PIK3C3Q8NEB9 887 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 TMEM255BQ8WV15 326 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 TMEM239Q8WW34 195 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 SLC25A36Q96CQ1 311 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 TRMT61AQ96FX7 289 aaKnown RBP10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 HS6ST2Q96MM7 605 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 MOGAT1Q96PD6 335 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 KCNK17Q96T54 332 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 TRIM15Q9C019 465 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 MAGIXQ9H6Y5 334 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 IL1RAPQ9NPH3 570 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 MAN2C1Q9NTJ4 1040 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 SLC7A8Q9UHI5 535 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 POMPQ9Y244 141 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 GPR52Q9Y2T5 361 aa10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 FAM32AQ9Y421 112 aaKnown RBP10.5□□□□□ -0.73
SQSTM1-206ENST00000466342 FREM1Q5H8C1 2179 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 AQP12BA6NM10 295 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 M0R082 166 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 KPNA4O00629 521 aaPredicted RBP10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 GPR171O14626 319 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 GPRIN2O60269 458 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 IGF2P01344 180 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 MT-ND1P03886 318 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 PSMB1P20618 241 aaKnown RBP10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 FUT4P22083 530 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 CBLP22681 906 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 GRPRP30550 384 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 UGT2B15P54855 530 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 FLOT2Q14254 428 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 SLC17A1Q14916 467 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF74Q16587 644 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 ANKRD34AQ69YU3 496 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 ASRGL1Q7L266 308 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 ZDHHC21Q8IVQ6 265 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 AQP12AQ8IXF9 295 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 C10orf53Q8N6V4 93 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 SCAIQ8N9R8 606 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 ADPRHL1Q8NDY3 354 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF417Q8TAU3 575 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 ZC3HAV1LQ96H79 300 aaKnown RBP10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 DHRS1Q96LJ7 313 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF587Q96SQ5 575 aaPredicted RBP10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 SEPHS2Q99611 448 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 SF3B5Q9BWJ5 86 aaKnown RBP10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 ASPNQ9BXN1 380 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 HDHD5Q9BXW7 423 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 ANKRD19PQ9H560 264 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 FKRPQ9H9S5 495 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 NMNAT1Q9HAN9 279 aaPredicted RBP10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 MEPEQ9NQ76 525 aaPredicted RBP10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 EMC3Q9P0I2 261 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 B3GALT5Q9Y2C3 310 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 MED31Q9Y3C7 131 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 CORINQ9Y5Q5 1042 aa10.49□□□□□ -0.73
SQSTM1-206ENST00000466342 PKD1L1Q8TDX9 2849 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 A0A1W2PRQ8 180 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 LRRN3E7EW58 273 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 OVOL3O00110 214 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 DIRAS1O95057 198 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 VAMP5O95183 116 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 CH25HO95992 272 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 H1F0P07305 194 aaKnown RBP10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 ACVR1BP36896 505 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 MAGEA2P43356 314 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 RPS4XP62701 263 aaKnown RBP10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 DGCR6Q14129 220 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 FAM98BQ52LJ0 330 aaKnown RBP10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 BEX5Q5H9J7 111 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 TMEM225Q6GV28 225 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF704Q6ZNC4 412 aaPredicted RBP10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 DNM1P46Q6ZS02 220 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 C22orf34Q6ZV56 151 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 H1FNTQ75WM6 255 aaPredicted RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms