RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 TPMTP51580 245 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 KRTAP10-8P60410 259 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 TIMM10P62072 90 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 IRX3P78415 501 aaPredicted RBP2.37□□□□□ -2.03
VPS41-207ENST00000439468 REG3AQ06141 175 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 UNC119Q13432 240 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 OR5I1Q13606 314 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 GK3PQ14409 553 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 NSDHLQ15738 373 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 PARP15Q460N3 678 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 FILIP1LQ4L180 1135 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 EOGTQ5NDL2 527 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 C1orf100Q5SVJ3 147 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 ENPP6Q6UWR7 440 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 C19orf35Q6ZS72 473 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 CNPY4Q8N129 248 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 PNKDQ8N490 385 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 NKAPP1Q8N9T2 125 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 OR1L6Q8NGR2 347 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 SHC3Q92529 594 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 TMEM101Q96IK0 257 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 PANX2Q96RD6 677 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 KCNA7Q96RP8 456 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 SELENOIQ9C0D9 397 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 PPA2Q9H2U2 334 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 NHEJ1Q9H9Q4 299 aaPredicted RBP2.37□□□□□ -2.03
VPS41-207ENST00000439468 BFARQ9NZS9 450 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 RPS6KB2Q9UBS0 482 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 MTRF1LQ9UGC7 380 aaKnown RBP2.37□□□□□ -2.03
VPS41-207ENST00000439468 SLC7A8Q9UHI5 535 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 ZNF639Q9UID6 485 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 MMP17Q9ULZ9 603 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 PIGLQ9Y2B2 252 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 RPL36Q9Y3U8 105 aaKnown RBP2.37□□□□□ -2.03
VPS41-207ENST00000439468 CUL9Q8IWT3 2517 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 COL24A1Q17RW2 1714 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 ADCY9O60503 1353 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 LAMB4A4D0S4 1761 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 PRRC2AP48634 2157 aaKnown RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 SCAPERQ9BY12 1400 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 SETD5Q9C0A6 1442 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 LAMC1P11047 1609 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 MROH1Q8NDA8 1641 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 CHD2O14647 1828 aaKnown RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 TMEM110-MUSTN1A8MSY1 372 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 H0Y9J4 135 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 FAM189A1O60320 539 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 BBOX1O75936 387 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 IGLV1-47P01700 117 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 KLK3P07288 261 aaPredicted RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 ATP1B2P14415 290 aaPredicted RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 HTR1EP28566 365 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 PBLDP30039 288 aaPredicted RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 OPRD1P41143 372 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 KIR2DS4P43632 304 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 CEBPDP49716 269 aaPredicted RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 NUP107P57740 925 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 ARFRP1Q13795 201 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 MICBQ29980 383 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 KLHL38Q2WGJ6 581 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 RABL6Q3YEC7 729 aaPredicted RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 PHYHD1Q5SRE7 291 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 C11orf71Q6IPW1 123 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 ZNF620Q6ZNG0 422 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 THOC6Q86W42 341 aaKnown RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 PAQR7Q86WK9 346 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 SUMF2Q8NBJ7 301 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 NEIL3Q8TAT5 605 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 RNF138Q8WVD3 245 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 FBXO32Q969P5 355 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 NT5C3BQ969T7 300 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 ITCHQ96J02 903 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 ZNF641Q96N77 438 aaPredicted RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 MS4A4EQ96PG1 132 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 P2RY13Q9BPV8 354 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 HPCAL4Q9UM19 191 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 PRG3Q9Y2Y8 225 aaPredicted RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 CDH10Q9Y6N8 788 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 GPATCH8Q9UKJ3 1502 aaKnown RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 RGPD3A6NKT7 1758 aaPredicted RBP2.36□□□□□ -2.03
VPS41-207ENST00000439468 RGPD4Q7Z3J3 1758 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 ADGRB2O60241 1585 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 PLEKHG1Q9ULL1 1385 aa2.36□□□□□ -2.03
VPS41-207ENST00000439468 PHF3Q92576 2039 aaKnown RBP2.35□□□□□ -2.03
VPS41-207ENST00000439468 TMEM131LA2VDJ0 1609 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 COL6A3P12111 3177 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 PLCH1Q4KWH8 1693 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 NKTRP30414 1462 aaKnown RBP2.35□□□□□ -2.03
VPS41-207ENST00000439468 ZNF518AQ6AHZ1 1483 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 OR5B21A6NL26 309 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 OR52A4PA6NMU1 304 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 LOC110117498-PIK3R3F6TDL0 507 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 KRTAP4-16G5E9R7 235 aaPredicted RBP2.35□□□□□ -2.03
VPS41-207ENST00000439468 GIPP09681 153 aaPredicted RBP2.35□□□□□ -2.03
VPS41-207ENST00000439468 UBTFL1P0CB47 393 aaPredicted RBP2.35□□□□□ -2.03
VPS41-207ENST00000439468 CHTF8P0CG12 524 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 CCNE1P24864 410 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 CD1CP29017 333 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 FMO3P31513 532 aa2.35□□□□□ -2.03
VPS41-207ENST00000439468 HNRNPH3P31942 346 aaKnown RBP2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms