RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 NOX3Q9HBY0 568 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 B3GAT2Q9NPZ5 323 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 MED29Q9NX70 200 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 CCDC167Q9P0B6 97 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 KLHL14Q9P2G3 628 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.56□□□□□ -0.4
SDC1-204ENST00000429035 TESQ9UGI8 421 aaKnown RBP12.56□□□□□ -0.4
SDC1-204ENST00000429035 PRDM4Q9UKN5 801 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 HLA-HP01893 362 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 ADRA2AP08913 450 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 HLA-DOBP13765 273 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 ETS2P15036 469 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 IFNGR1P15260 489 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 IL2RGP31785 369 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 CDK6Q00534 326 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 PIGFQ07326 219 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 SCARB2Q14108 478 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 DHRS4L2Q6PKH6 230 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 ZNF813Q6ZN06 617 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 RINLQ6ZS11 566 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 TMEM123Q8N131 208 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 OR6N1Q8NGY5 312 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 SLC35B4Q969S0 331 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 SPDL1Q96EA4 605 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 SLC47A1Q96FL8 570 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 MS4A3Q96HJ5 214 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 EPYCQ99645 322 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 NARFLQ9H6Q4 476 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 TMEM27Q9HBJ8 222 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 TCF7L2Q9NQB0 619 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 SLC25A37Q9NYZ2 338 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 FBXO9Q9UK97 447 aaPredicted RBP12.55□□□□□ -0.4
SDC1-204ENST00000429035 POFUT2Q9Y2G5 429 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 CMAHPQ9Y471 501 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 NOX1Q9Y5S8 564 aa12.55□□□□□ -0.4
SDC1-204ENST00000429035 LRRN3E7EW58 273 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 C11orf98E9PRG8 122 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 LYNX1G3V0Z9 82 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 TPST1O60507 370 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 HPRP00739 348 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 LYNX1P0DP58 116 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 BMP2P12643 396 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 B4GALT1P15291 398 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 AHCYP23526 432 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 PTDSS1P48651 473 aaKnown RBP12.54□□□□□ -0.4
SDC1-204ENST00000429035 PMS2P3Q13401 168 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 CAMK2DQ13557 499 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 OR1Q1Q15612 314 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 TRIP10Q15642 601 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 GSG1Q2KHT4 349 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 GKAP1Q5VSY0 366 aaPredicted RBP12.54□□□□□ -0.4
SDC1-204ENST00000429035 REEP3Q6NUK4 255 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 ULK3Q6PHR2 472 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 RANBP3LQ86VV4 465 aaPredicted RBP12.54□□□□□ -0.4
SDC1-204ENST00000429035 C10orf111Q8N326 155 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 FAM169BQ8N8A8 192 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 ADPRHL1Q8NDY3 354 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 UBASH3BQ8TF42 649 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 DOK1Q99704 481 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 SYT3Q9BQG1 590 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 SLAMF8Q9P0V8 285 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 FZR1Q9UM11 496 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 ANGPT4Q9Y264 503 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 CORINQ9Y5Q5 1042 aa12.54□□□□□ -0.4
SDC1-204ENST00000429035 SVEP1Q4LDE5 3571 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 A0A087WUJ7 227 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 ZNF726A6NNF4 738 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 M0R233 179 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 RAB36O95755 333 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 HOXB9P17482 250 aaPredicted RBP12.53□□□□□ -0.4
SDC1-204ENST00000429035 TCN1P20061 433 aaPredicted RBP12.53□□□□□ -0.4
SDC1-204ENST00000429035 PPIBP23284 216 aaKnown RBP12.53□□□□□ -0.4
SDC1-204ENST00000429035 SLC6A2P23975 617 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 AQP5P55064 265 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 GALK2Q01415 458 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 PUDPQ08623 228 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 SQLEQ14534 574 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 MFSD13AQ14CX5 517 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 TRMT5Q32P41 509 aaKnown RBP12.53□□□□□ -0.4
SDC1-204ENST00000429035 PAGE3Q5JUK9 113 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 FAM91A1Q658Y4 838 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 EPGNQ6UW88 154 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 NET1Q7Z628 596 aaPredicted RBP12.53□□□□□ -0.4
SDC1-204ENST00000429035 MSRB3Q8IXL7 192 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 C20orf196Q8IYI0 205 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 LSMEM1Q8N8F7 131 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 ANKK1Q8NFD2 765 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 TXNDC15Q96J42 360 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 MOGAT1Q96PD6 335 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 ZNF607Q96SK3 696 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 FOXB1Q99853 325 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 EBF4Q9BQW3 602 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 MRPL37Q9BZE1 423 aaKnown RBP12.53□□□□□ -0.4
SDC1-204ENST00000429035 TMBIM4Q9HC24 238 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 VAPAQ9P0L0 249 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 SPEF1Q9Y4P9 236 aa12.53□□□□□ -0.4
SDC1-204ENST00000429035 A0A0B4J2E0 115 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 A0A1B0GX12 115 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 A0A1W2PPW3 197 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 TMEM129A0AVI4 362 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms