RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 LIN28AQ9H9Z2 209 aaKnown RBP7.6□□□□□ -1.19
USP54-203ENST00000418501 EMC3Q9P0I2 261 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 ZNF346Q9UL40 294 aaKnown RBP7.6□□□□□ -1.19
USP54-203ENST00000418501 PRSS37A4D1T9 235 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 FAM25AB3EWG3 89 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 FAM25CB3EWG5 89 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 FAM25GB3EWG6 89 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 HYAL3O43820 417 aaPredicted RBP7.6□□□□□ -1.19
USP54-203ENST00000418501 KRT33AO76009 404 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 CDRT1O95170 752 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 IGHMP01871 453 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 MRPL3P09001 348 aaKnown RBP7.6□□□□□ -1.19
USP54-203ENST00000418501 FGF9P31371 208 aaPredicted RBP7.6□□□□□ -1.19
USP54-203ENST00000418501 MTNR1BP49286 362 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 DLX5P56178 289 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 NCS1P62166 190 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 HSF1Q00613 529 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 ZNF791Q3KP31 576 aaPredicted RBP7.6□□□□□ -1.19
USP54-203ENST00000418501 LRRN1Q6UXK5 716 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 ZNF704Q6ZNC4 412 aaPredicted RBP7.6□□□□□ -1.19
USP54-203ENST00000418501 ZNF676Q8N7Q3 588 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 THEM6Q8WUY1 208 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 SNTG1Q9NSN8 517 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 KNL1Q8NG31 2342 aa7.6□□□□□ -1.19
USP54-203ENST00000418501 TRBV2A0A0J9YWF9 115 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 GPR171O14626 319 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 DXOO77932 396 aaKnown RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 GAAP10253 952 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 TMEM176BQ3YBM2 270 aaPredicted RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 AGAP7PQ5VUJ5 663 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 VASH1Q7L8A9 365 aaPredicted RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 IGFN1Q86VF2 1251 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 ZBTB8BQ8NAP8 495 aaPredicted RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 AGAP4Q96P64 663 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 LMF1Q96S06 567 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 TMED9Q9BVK6 235 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.59□□□□□ -1.19
USP54-203ENST00000418501 TCF7L1Q9HCS4 588 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 MRPS18CQ9Y3D5 142 aaKnown RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 CMAHPQ9Y471 501 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 H3BML4 177 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 PLPP3O14495 311 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 F13BP05160 661 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 OCM2P0CE71 109 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 OCMP0CE72 109 aaPredicted RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 POU3F2P20265 443 aaPredicted RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 NR4A1P22736 598 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 PTBP1P26599 531 aaKnown RBP eCLIP7.59□□□□□ -1.19
USP54-203ENST00000418501 UQCRC1P31930 480 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 NAA10P41227 235 aaPredicted RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 TGM4P49221 684 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 LIMK1P53667 647 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 RAC1P63000 192 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 SIRPAP78324 504 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 EFNB1P98172 346 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 PITPNAQ00169 270 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 SPCS2Q15005 226 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 ACKR1Q16570 336 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 CTF1Q16619 201 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 C4orf36Q96KX1 117 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 CCDC32Q9BV29 185 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 PARPBPQ9NWS1 579 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 GTF2A1LQ9UNN4 478 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 PFDN1O60925 122 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 CBFA2T3O75081 653 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 PMS2P2O95744 297 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 GDF1P27539 372 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 ENTPD1P49961 510 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 POU3F1Q03052 451 aaPredicted RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 ZNF181Q2M3W8 571 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 YIF1BQ5BJH7 314 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 THSD4Q6ZMP0 1018 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 ZNF517Q6ZMY9 492 aaPredicted RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 TMPPEQ6ZT21 453 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 C19orf18Q8NEA5 215 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 DEFB124Q8NES8 71 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 OR6Q1Q8NGQ2 317 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 ZNF671Q8TAW3 534 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 OR51E2Q9H255 320 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 FANCFQ9NPI8 374 aa7.59□□□□□ -1.19
USP54-203ENST00000418501 MCTS1Q9ULC4 181 aaKnown RBP7.59□□□□□ -1.19
USP54-203ENST00000418501 TMEM212A6NML5 194 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 SLC16A7O60669 478 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 COL9A2Q14055 689 aaPredicted RBP7.59□□□□□ -1.2
USP54-203ENST00000418501 PLPPR5Q32ZL2 321 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 HSD17B12Q53GQ0 312 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 PRAMEF20Q5VT98 475 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 TRIQKQ629K1 86 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 METAP1DQ6UB28 335 aaPredicted RBP7.59□□□□□ -1.2
USP54-203ENST00000418501 PPP1R32Q7Z5V6 425 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 SLC22A16Q86VW1 577 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 CCDC54Q8NEL0 328 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 SLC30A2Q9BRI3 323 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 SF3B5Q9BWJ5 86 aaKnown RBP7.59□□□□□ -1.2
USP54-203ENST00000418501 SMURF1Q9HCE7 757 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 QPCTLQ9NXS2 382 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 LRFN1Q9P244 771 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 KLHL9Q9P2J3 617 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 UNC13CQ8NB66 2214 aa7.59□□□□□ -1.2
USP54-203ENST00000418501 CACNA1EQ15878 2313 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms