RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 VGLL3A8MV65 326 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 BCKDKO14874 412 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 CCDC22O60826 627 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 REM1O75628 298 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 B3GALNT1O75752 331 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 KRT16P08779 473 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 HOXD4P09016 255 aaPredicted RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 IFI6P09912 130 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 DRD5P21918 477 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 GPX3P22352 226 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 ELAVL4P26378 380 aaKnown RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 C21orf33P30042 268 aaPredicted RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 AMTP48728 403 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 MNAT1P51948 309 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 ABCE1P61221 599 aaKnown RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 COX10Q12887 443 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 SNTA1Q13424 505 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 DECR1Q16698 335 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 SMU1Q2TAY7 513 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 ZNF791Q3KP31 576 aaPredicted RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 WLSQ5T9L3 541 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 GPR139Q6DWJ6 353 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 FAM71E1Q6IPT2 247 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 BHLHB9Q6PI77 547 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 XKRXQ6PP77 449 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 CLEC18BQ6UXF7 455 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 C16orf47Q6ZP98 133 aaPredicted RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 ZCCHC23Q6ZST2 131 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 ZNF615Q8N8J6 731 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 CLEC18CQ8NCF0 446 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 OR9A2Q8NGT5 310 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 CNRIP1Q96F85 164 aaPredicted RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 TTTY12Q9BZ98 90 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 REEP4Q9H6H4 257 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 SDHAF3Q9NRP4 125 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 ERRFI1Q9UJM3 462 aaPredicted RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 DNAJC15Q9Y5T4 150 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 CROCCQ5TZA2 2017 aa5.65□□□□□ -1.5
USP40-202ENST00000409945 ZGRF1Q86YA3 2104 aa5.65□□□□□ -1.5
USP40-202ENST00000409945 ATP6AP2A0A1C7CYW4 349 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 TRPC5OSA6NMA1 111 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 WASHC1A8K0Z3 465 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 FAM166BA8MTA8 275 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 SLCO1B7G3V0H7 640 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 HCN1O60741 890 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 PEX11AO75192 247 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 ATP6AP2O75787 350 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 TRAPPC6AO75865 159 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 ATP6V1G2O95670 118 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 CHRNGP07510 517 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 CT62P0C5K7 136 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 CCL3P10147 92 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 GABRA1P14867 456 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 ZNF12P17014 697 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 CALB2P22676 271 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 DNASE1P24855 282 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 GDF1P27539 372 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 RFC3P40938 356 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 SLC1A6P48664 564 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 DNASE1L1P49184 302 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 RPL14P50914 215 aaKnown RBP5.65□□□□□ -1.51
USP40-202ENST00000409945 CLDN20P56880 219 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 ROR2Q01974 943 aaKnown RBP5.65□□□□□ -1.51
USP40-202ENST00000409945 EXOSC7Q15024 291 aaKnown RBP5.65□□□□□ -1.51
USP40-202ENST00000409945 ZNF628Q5EBL2 1059 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 PRAMEF20Q5VT98 475 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 DGAT2L6Q6ZPD8 337 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 ZNF575Q86XF7 245 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 OR10G3Q8NGC4 313 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 OR1J4Q8NGS1 313 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 FAM57AQ8TBR7 257 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 OMA1Q96E52 524 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 HARBI1Q96MB7 349 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 ZNF681Q96N22 645 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 TSSK3Q96PN8 268 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 GPATCH1Q9BRR8 931 aaKnown RBP5.65□□□□□ -1.51
USP40-202ENST00000409945 SLC25A33Q9BSK2 321 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 OSBPL11Q9BXB4 747 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 TEX12Q9BXU0 123 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 KRTAP4-2Q9BYR5 136 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 DEFB127Q9H1M4 99 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 CHST11Q9NPF2 352 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 KCNS2Q9ULS6 477 aa5.65□□□□□ -1.51
USP40-202ENST00000409945 ASH1LQ9NR48 2969 aaKnown RBP5.65□□□□□ -1.51
USP40-202ENST00000409945 TRGV5A0A0B4J1U4 118 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 A0A1B0GTH9 108 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 hCG_1809904A0A1W2PP81 198 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 A0A1W2PPE2 198 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 A0A1W2PR64 198 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 OR6C70A6NIJ9 312 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 G3V3Y1 287 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 PLOD2O00469 737 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 LSM1O15116 133 aaKnown RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 SMAD9O15198 467 aaKnown RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 CFLARO15519 480 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 TBX19O60806 448 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 KDM4BO94953 1096 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 LRATO95237 230 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 BAG2O95816 211 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 LDLRP01130 860 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms