RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ANKDD1AQ495B1 522 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 FGD3Q5JSP0 725 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 PDSS1Q5T2R2 415 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 PGBD2Q6P3X8 592 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 SHQ1Q6PI26 577 aaKnown RBP8.17□□□□□ -1.1
VPS53-203ENST00000401468 ZNF730Q6ZMV8 503 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 ZNF771Q7L3S4 317 aaPredicted RBP8.17□□□□□ -1.1
VPS53-203ENST00000401468 ZER1Q7Z7L7 766 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 NRMQ8IXM6 262 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 UBQLNLQ8IYU4 475 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 SLC43A2Q8N370 569 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 OR52J3Q8NH60 311 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 LINC01560Q8TB33 94 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 OSTF1Q92882 214 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 BPIFA2Q96DR5 249 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 ZNF845Q96IR2 970 aaPredicted RBP8.17□□□□□ -1.1
VPS53-203ENST00000401468 ZFP3Q96NJ6 502 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 PKP2Q99959 881 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 BDH2Q9BUT1 245 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 GABARAPL1Q9H0R8 117 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 CRIM1Q9NZV1 1036 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 B3GAT1Q9P2W7 334 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 B3GALT5Q9Y2C3 310 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 HIF3AQ9Y2N7 669 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 SAMHD1Q9Y3Z3 626 aaKnown RBP8.17□□□□□ -1.1
VPS53-203ENST00000401468 ZNF469Q96JG9 3925 aaPredicted RBP8.17□□□□□ -1.1
VPS53-203ENST00000401468 ALPK2Q86TB3 2170 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 NPIPB13A6NJU9 1138 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 ZNF814B7Z6K7 855 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 NPIPB4C9JG80 1138 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 PLPP3O14495 311 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 SEC14L5O43304 696 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 CXCL13O43927 109 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 MGRN1O60291 552 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 AQP8O94778 261 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 VAMP5O95183 116 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 RCBTB2O95199 551 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 TGM6O95932 706 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 CH25HO95992 272 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 OPN1LWP04000 364 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 CRHP06850 196 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 TFPIP10646 304 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 FCGR2AP12318 317 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 IFI30P13284 250 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 CCNA2P20248 432 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 GRPRP30550 384 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 CEACAM8P31997 349 aaPredicted RBP8.16□□□□□ -1.1
VPS53-203ENST00000401468 EIF1AXP47813 144 aaKnown RBP8.16□□□□□ -1.1
VPS53-203ENST00000401468 IST1P53990 364 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 FXYD6P3P58550 94 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 TSPAN31Q12999 210 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 RIPK1Q13546 671 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 SLC17A1Q14916 467 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 PON3Q15166 354 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 OR7A5Q15622 319 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 SGCBQ16585 318 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 RIPPLY2Q5TAB7 128 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 FAHD1Q6P587 224 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 H1FNTQ75WM6 255 aaPredicted RBP8.16□□□□□ -1.1
VPS53-203ENST00000401468 RAI1Q7Z5J4 1906 aaPredicted RBP8.16□□□□□ -1.1
VPS53-203ENST00000401468 LUZP2Q86TE4 346 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 EPHX4Q8IUS5 362 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 P3H2Q8IVL5 708 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 PQLC1Q8N2U9 271 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 SVOPLQ8N434 492 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 ACBD4Q8NC06 268 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 ATP6V1C2Q8NEY4 427 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 OR5J2Q8NH18 312 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 OR5K1Q8NHB7 308 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 FNDC9Q8TBE3 224 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 PIGXQ8TBF5 258 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 SMPDL3BQ92485 455 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 SGTBQ96EQ0 304 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 GPX7Q96SL4 187 aaPredicted RBP8.16□□□□□ -1.1
VPS53-203ENST00000401468 GPA33Q99795 319 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 SF3B5Q9BWJ5 86 aaKnown RBP8.16□□□□□ -1.1
VPS53-203ENST00000401468 OSBPL10Q9BXB5 764 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 MRPL18Q9H0U6 180 aaKnown RBP8.16□□□□□ -1.1
VPS53-203ENST00000401468 DCLRE1BQ9H816 532 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 BCO1Q9HAY6 547 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 NANSQ9NR45 359 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 GLRX2Q9NS18 164 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 TAS2R5Q9NYW4 299 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 C6orf203Q9P0P8 240 aaPredicted RBP8.16□□□□□ -1.1
VPS53-203ENST00000401468 STX18Q9P2W9 335 aaKnown RBP8.16□□□□□ -1.1
VPS53-203ENST00000401468 MCTS1Q9ULC4 181 aaKnown RBP8.16□□□□□ -1.1
VPS53-203ENST00000401468 TMCC3Q9ULS5 477 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 SIGLEC7Q9Y286 467 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 PLEKHA6Q9Y2H5 1048 aa8.16□□□□□ -1.1
VPS53-203ENST00000401468 SLC22A20A6NK97 555 aa8.15□□□□□ -1.1
VPS53-203ENST00000401468 ZNF724A8MTY0 619 aa8.15□□□□□ -1.1
VPS53-203ENST00000401468 LRRN3E7EW58 273 aa8.15□□□□□ -1.1
VPS53-203ENST00000401468 MS4A18H0YCH9 400 aa8.15□□□□□ -1.1
VPS53-203ENST00000401468 KPNA4O00629 521 aaPredicted RBP8.15□□□□□ -1.1
VPS53-203ENST00000401468 CASQ2O14958 399 aaPredicted RBP8.15□□□□□ -1.1
VPS53-203ENST00000401468 RAMP1O60894 148 aa8.15□□□□□ -1.1
VPS53-203ENST00000401468 SS18L1O75177 396 aaPredicted RBP8.15□□□□□ -1.1
VPS53-203ENST00000401468 PTP4A3O75365 173 aa8.15□□□□□ -1.1
VPS53-203ENST00000401468 CCNB2O95067 398 aa8.15□□□□□ -1.1
VPS53-203ENST00000401468 ALX3O95076 343 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms