RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 LOC100509620A0A075B734 347 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 FAM74A7A6NL05 159 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 RDH16O75452 317 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 NDUFB2O95178 105 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 CSN2P05814 226 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 FAM74A3Q4VXF1 159 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 FLVCR1-AS1Q8TAF5 88 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 ALG12Q9BV10 488 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 SLC17A9Q9BYT1 436 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 NDUFB6O95139 128 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 GJA4P35212 333 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 LINC01590Q5TEZ4 76 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 ZNF660Q6AZW8 331 aaPredicted RBP19.13■□□□□ 0.65
CTCF-202ENST00000401394 C11orf88Q6PI97 169 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 DND1Q8IYX4 353 aaKnown RBP19.13■□□□□ 0.65
CTCF-202ENST00000401394 METTL27Q8N6F8 245 aaPredicted RBP19.13■□□□□ 0.65
CTCF-202ENST00000401394 CDRT4Q8N9R6 151 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 FAM71CQ8NEG0 241 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 APOOQ9BUR5 198 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 PTDSS2Q9BVG9 487 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 GTF2A1LQ9UNN4 478 aa19.13■□□□□ 0.65
CTCF-202ENST00000401394 TOR1AO14656 332 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 CD3DP04234 171 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 TLX1P31314 330 aaPredicted RBP19.12■□□□□ 0.65
CTCF-202ENST00000401394 ART1P52961 327 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 TMED4Q7Z7H5 227 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 CYYR1Q96J86 154 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 C7orf50Q9BRJ6 194 aaKnown RBP19.12■□□□□ 0.65
CTCF-202ENST00000401394 PLA2G2FQ9BZM2 168 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 SERTAD3Q9UJW9 196 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 TGFBR3LH3BV60 316 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 GIPP09681 153 aaPredicted RBP19.12■□□□□ 0.65
CTCF-202ENST00000401394 APEHP13798 732 aaKnown RBP19.12■□□□□ 0.65
CTCF-202ENST00000401394 GABRA1P14867 456 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 MST1P26927 711 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 CCR4P51679 360 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 ACTA2P62736 377 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 ACTG2P63267 376 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 OR6V1Q8N148 313 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 FAM174AQ8TBP5 190 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 KIF25Q9UIL4 384 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 SLC17A4Q9Y2C5 497 aa19.12■□□□□ 0.65
CTCF-202ENST00000401394 CYR61O00622 381 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 CCSO14618 274 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 OIP5O43482 229 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 CTNSO60931 367 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 HIST1H2ABP04908 130 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 MAT1AQ00266 395 aaKnown RBP19.11■□□□□ 0.65
CTCF-202ENST00000401394 LTBQ06643 244 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 ELP2Q6IA86 826 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 FIGLAQ6QHK4 219 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 HIST3H2AQ7L7L0 130 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 OR9A4Q8NGU2 314 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 HIST1H2ACQ93077 130 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 HAVCR1Q96D42 359 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 SGTBQ96EQ0 304 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 SERINC2Q96SA4 455 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 GAS2L1Q99501 681 aaPredicted RBP19.11■□□□□ 0.65
CTCF-202ENST00000401394 RPP25Q9BUL9 199 aaKnown RBP19.11■□□□□ 0.65
CTCF-202ENST00000401394 THAP10Q9P2Z0 257 aaPredicted RBP19.11■□□□□ 0.65
CTCF-202ENST00000401394 TRAV18A0A075B6X5 111 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 RP2O75695 350 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 OR2A4O95047 310 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 LIN54Q6MZP7 749 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 SYS1Q8N2H4 156 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 TNFAIP8L1Q8WVP5 186 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 RADILQ96JH8 1075 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 LCORQ96JN0 433 aaPredicted RBP19.11■□□□□ 0.65
CTCF-202ENST00000401394 ADAD1Q96M93 576 aaKnown RBP19.11■□□□□ 0.65
CTCF-202ENST00000401394 OR2A7Q96R45 310 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 ZNF426Q9BUY5 554 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 PLEKHA1Q9HB21 404 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 DUSP22Q9NRW4 184 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 KLF15Q9UIH9 416 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 M0QYG6 137 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 C4orf46Q504U0 113 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 GSG1LQ6UXU4 331 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 SLC35D2Q76EJ3 337 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 SLC36A1Q7Z2H8 476 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 DPY19L4Q7Z388 723 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 FAM219AQ8IW50 185 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 RCBTB1Q8NDN9 531 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 TMEM106AQ96A25 262 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 ASB16Q96NS5 453 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 TIMM29Q9BSF4 260 aa19.11■□□□□ 0.65
CTCF-202ENST00000401394 PRSS38A1L453 326 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 AGR2O95994 175 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 SMIM10L1P0DMW3 83 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 RPS15AP62244 130 aaKnown RBP19.1■□□□□ 0.65
CTCF-202ENST00000401394 DEFA5Q01523 94 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 SLC6A19Q695T7 634 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 OR10K2Q6IF99 312 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 RPL13AP3Q6NVV1 102 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 SMIM10Q96HG1 83 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 ADAT1Q9BUB4 502 aaKnown RBP19.1■□□□□ 0.65
CTCF-202ENST00000401394 RTTNQ86VV8 2226 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 UPK3AO75631 287 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 GPR75O95800 540 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 GTF2F2P13984 249 aa19.1■□□□□ 0.65
CTCF-202ENST00000401394 GPR18Q14330 331 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms