RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 HOXD12P35452 270 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 DLX5P56178 289 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 FLI1Q01543 452 aaPredicted RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 LTBQ06643 244 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 TNK1Q13470 666 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SELPLGQ14242 412 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ZNF74Q16587 644 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 LRRC26Q2I0M4 334 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ACTBL2Q562R1 376 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 PRAMEF5Q5TYX0 476 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 PRAMEF6Q5VXH4 476 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 PM20D2Q8IYS1 436 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 C15orf54Q8N8G6 183 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 PLPP5Q8NEB5 264 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 BEST4Q8NFU0 473 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 S1PR3Q99500 378 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 FAM173AQ9BQD7 235 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 NDFIP1Q9BT67 221 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ZDHHC5Q9C0B5 715 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ISYNA1Q9NPH2 558 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 HS3ST3A1Q9Y663 406 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 INTS1Q8N201 2190 aaKnown RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 SLIT2O94813 1529 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 IGHV3-20A0A0C4DH32 117 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 LOC285095A0A1B0GVY8 99 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SLC22A23A1A5C7 686 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 M0R1B8 84 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 GPR39O43194 453 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 GALR2O43603 387 aaPredicted RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 GM2AP17900 193 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ADRA1AP35348 466 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 PPIAP62937 165 aaKnown RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 TLE4Q04727 773 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 PROX2Q3B8N5 592 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ARHGAP11BQ3KRB8 267 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 CMTM4Q8IZR5 234 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SIMC1Q8NDZ2 872 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 OR11G2Q8NGC1 345 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 OR13C2Q8NGS9 318 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ALG12Q9BV10 488 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 NRSN2Q9GZP1 204 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 PLEKHF2Q9H8W4 249 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 NOX4Q9NPH5 578 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 INPP5EQ9NRR6 644 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 TMEM181Q9P2C4 612 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 CHRNA9Q9UGM1 479 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ADAM29Q9UKF5 820 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ASB4Q9Y574 426 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ABCA4P78363 2273 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SPTBN2O15020 2390 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SEC14L6B5MCN3 397 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 K7EPK0 472 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ELAVL4P26378 380 aaKnown RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 AOAHP28039 575 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 CST5P28325 142 aaPredicted RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 HOXD9P28356 352 aaPredicted RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 ETV6P41212 452 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SMAD4Q13485 552 aaKnown RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 ZNF789Q5FWF6 425 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 FAM69AQ5T7M9 428 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ZNF626Q68DY1 528 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 PLAG1Q6DJT9 500 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 Q6ZTK2 550 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 CAMKMTQ7Z624 323 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 LINC00346Q8IVM7 164 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ADGRG5Q8IZF4 528 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 FAM71E2Q8N5Q1 922 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SLC37A2Q8TED4 501 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 PIGTQ969N2 578 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 TMEM230Q96A57 120 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 FBXO17Q96EF6 278 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 TCEAL2Q9H3H9 227 aaPredicted RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 PATZ1Q9HBE1 687 aaKnown RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 SPACA1Q9HBV2 294 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SLC22A11Q9NSA0 550 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 IL37Q9NZH6 218 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 THAP10Q9P2Z0 257 aaPredicted RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 HCSTQ9UBK5 93 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 IGHV3-64DA0A0J9YX35 117 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 IDSB3KWA1 339 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 VAMP5O95183 116 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 LCN8Q6JVE9 175 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 PDLIM7Q9NR12 457 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 SDR39U1Q9NRG7 319 aaPredicted RBP6.65□□□□□ -1.34
UPF2-203ENST00000397053 MMP17Q9ULZ9 603 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 RASD1Q9Y272 281 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 POLDIP2Q9Y2S7 368 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 ZNF281Q9Y2X9 895 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 DRGXA6NNA5 263 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 H3BMQ9 156 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 TYROBPO43914 113 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 UBCP0CG48 685 aaKnown RBP6.65□□□□□ -1.34
UPF2-203ENST00000397053 MYOGP15173 224 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 UBE2G1P62253 170 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 SLC5A12Q1EHB4 618 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 OGFOD3Q6PK18 319 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 PARM1Q6UWI2 310 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 C17orf107Q6ZR85 190 aa6.65□□□□□ -1.34
UPF2-203ENST00000397053 PIWIL3Q7Z3Z3 882 aaKnown RBP6.65□□□□□ -1.34
UPF2-203ENST00000397053 GPR150Q8NGU9 434 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms