RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ANGPTL6Q8NI99 470 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SGK3Q96BR1 496 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 MED20Q9H944 212 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SNX11Q9Y5W9 270 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 MYH13Q9UKX3 1938 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 A6NCN8 305 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 BTBD17A6NE02 478 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF264O43296 627 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 CD79AP11912 226 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 HTR2CP28335 458 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 PIGAP37287 484 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SNRPGP62308 76 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 BTG1P62324 171 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 KIAA0907Q7Z7F0 614 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF595Q8IYB9 648 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 EID2Q8N6I1 236 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 PRSS38A1L453 326 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 PHOX2AO14813 284 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 LALBAP00709 142 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 ITGB2P05107 769 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 METTL15P1P0C7V9 234 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 F3P13726 295 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 PCSK6P29122 969 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 THBS3P49746 956 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 HTR4Q13639 388 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 C17orf99Q6UX52 265 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 PRR18Q8N4B5 295 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SCARB1Q8WTV0 552 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 TMEM106AQ96A25 262 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 CASD1Q96PB1 797 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 MS4A8Q9BY19 250 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 TPSD1Q9BZJ3 242 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 TOLLIPQ9H0E2 274 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 METTL9Q9H1A3 318 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 CXorf36Q9H7Y0 433 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC22A11Q9NSA0 550 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 STARD5Q9NSY2 213 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 HS3ST2Q9Y278 367 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 KPTNQ9Y664 436 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 ARL2-SNX15V9GYD0 113 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 GON4LQ3T8J9 2241 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 CPNE6O95741 557 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 HBE1P02100 147 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 F13BP05160 661 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 RAB38P57729 211 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 MFGE8Q08431 387 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 HYAL4Q2M3T9 481 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SIAH3Q8IW03 269 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 KLHDC8BQ8IXV7 354 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 IFI44Q8TCB0 444 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC7A6Q92536 515 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 RADILQ96JH8 1075 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 TMEM59Q9BXS4 323 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 LIN7BQ9HAP6 207 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 MCTS1Q9ULC4 181 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 NPFFR2Q9Y5X5 522 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 MSTNO14793 375 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 FCER1GP30273 86 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 S100A11P31949 105 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CTBSQ01459 385 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CD276Q5ZPR3 534 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 H3F3CQ6NXT2 135 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 TBPL2Q6SJ96 375 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 NLGN4YQ8NFZ3 816 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 UPRTQ96BW1 309 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 SDSLQ96GA7 329 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC41A2Q96JW4 573 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 TNFRSF13CQ96RJ3 184 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 NIPSNAP1Q9BPW8 284 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 GALNT9Q9HCQ5 603 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 DUSP22Q9NRW4 184 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 C1orf123Q9NWV4 160 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 HCFC1R1Q9NWW0 138 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CCR9P51686 369 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CLDN12P56749 244 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CLDN2P57739 230 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 ACSM1Q08AH1 577 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CRMP1Q14194 572 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 RPE65Q16518 533 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 PLCXD3Q63HM9 321 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 ALKAL1Q6UXT8 129 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC24A4Q8NFF2 622 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CA5BP1Q8WTZ4 195 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 BADQ92934 168 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 INSM2Q96T92 566 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 MCOLN1Q9GZU1 580 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 C1orf198Q9H425 327 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF586Q9NXT0 402 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 OR2C1O95371 312 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 ATP1B1P05026 303 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CHRM4P08173 479 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 NME1P15531 152 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF44P15621 663 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CEBPBP17676 345 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 GCH1P30793 250 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 MZT1Q08AG7 82 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 KCNG3Q8TAE7 436 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CLSTN3Q9BQT9 956 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 ULBP2Q9BZM5 246 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms