RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 LRTOMTQ8WZ04 291 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 RNASE6Q93091 150 aaKnown RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 NABP1Q96AH0 204 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 TAPBPLQ9BX59 468 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 SLC24A3Q9HC58 644 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 HAO2Q9NYQ3 351 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 NDRG4Q9ULP0 352 aaKnown RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 GPR52Q9Y2T5 361 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 CHD8Q9HCK8 2581 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 IGLV1-44P01699 117 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 ANPEPP15144 967 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 RPS6KA3P51812 740 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 OR2B6P58173 313 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 RASGEF1BQ0VAM2 473 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 FOXF2Q12947 444 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 ACACAQ13085 2346 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 OR7A5Q15622 319 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 IGFBP7Q16270 282 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 BEND4Q6ZU67 534 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 RHOUQ7L0Q8 258 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 NUFIP2Q7Z417 695 aaKnown RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 BTLAQ7Z6A9 289 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 NOXO1Q8NFA2 376 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 OR10Q1Q8NGQ4 319 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 FNDC9Q8TBE3 224 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 IPCEF1Q8WWN9 437 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 SLC25A44Q96H78 314 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 TRIB1Q96RU8 372 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 MBOAT4Q96T53 435 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 RBM4BQ9BQ04 359 aaKnown RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 RBM4Q9BWF3 364 aaKnown RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 NDEL1Q9GZM8 345 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 NANSQ9NR45 359 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 INIPQ9NRY2 104 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 KCNG2Q9UJ96 466 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 OSGIN2Q9Y236 505 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 HSPE1-MOB4S4R3N1 261 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 COL6A6A6NMZ7 2263 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 A0A1B0GWJ7 208 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 J3QRE1 110 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 AKAP8O43823 692 aaKnown RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 IFI30P13284 250 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 PAX1P15863 534 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 CCKARP32238 428 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 RNF144AP50876 292 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 SMSP52788 366 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 ADARB1P78563 741 aaKnown RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 FBXW9Q5XUX1 488 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF730Q6ZMV8 503 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 Q6ZSR3 168 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 SPATA24Q86W54 205 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF433Q8N7K0 673 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 ARIH2OSQ8N7S6 290 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 NPEPL1Q8NDH3 523 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 HRASLS5Q96KN8 279 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 NIPSNAP1Q9BPW8 284 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 UCK2Q9BZX2 261 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 CMC2Q9NRP2 79 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 SEC14L4Q9UDX3 406 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 FBXL3Q9UKT7 428 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 ACACBO00763 2458 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 SMG1Q96Q15 3661 aaKnown RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 IGLV1-36A0A0B4J1U3 117 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 ITGA5P08648 1049 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 NR2C1P13056 603 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 CCR4P51679 360 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 SNRPGP62308 76 aaKnown RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 MESTQ5EB52 335 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 THEM4Q5T1C6 240 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 ADAM5Q6NVV9 412 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 THSD4Q6ZMP0 1018 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 LRRC17Q8N6Y2 441 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 MOSPD2Q8NHP6 518 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 CCDC124Q96CT7 223 aaKnown RBP6.19□□□□□ -1.42
LIMA1-202ENST00000394943 C9orf16Q9BUW7 83 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 RNPEPL1Q9HAU8 725 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 LUZP4Q9P127 313 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 EMC9Q9Y3B6 208 aa6.19□□□□□ -1.42
LIMA1-202ENST00000394943 MPDZO75970 2070 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 H0YAE9 185 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 SURF4O15260 269 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 ENTPD5O75356 428 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 TRMUO75648 421 aaKnown RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 TIPRLO75663 272 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 AKR7A3O95154 331 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 NUDT14O95848 222 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 CH25HO95992 272 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 IL2RAP01589 272 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 ACADSP16219 412 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 SLC6A6P31641 620 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 RYKP34925 604 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 IL18R1Q13478 541 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 DAG1Q14118 895 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 SLC35D3Q5M8T2 416 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 ABHD12BQ7Z5M8 362 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 TUSC5Q8IXB3 177 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 OR4Q3Q8NH05 313 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 ABHD3Q8WU67 409 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 TRUB1Q8WWH5 349 aaKnown RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 HDAC2Q92769 488 aaKnown RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms