RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 GTF2H4Q92759 462 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 TMIGD2Q96BF3 282 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 SLCO5A1Q9H2Y9 848 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 KLRC4-KLRK1H3BQV0 150 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 SORBS2O94875 1100 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 EPHA5P54756 1037 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 SYPL1Q16563 259 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 NSA2O95478 260 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 ITGB8P26012 769 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 LAP3P28838 519 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 MPPED2Q15777 294 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 HENMT1Q5T8I9 393 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 FRMPD2BQ6IN97 320 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 DPY19L2P2Q6ZN68 376 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 SEMA6CQ9H3T2 930 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 TRBV4-1A0A0J9YWV2 114 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 DHRS4L1P0CG22 281 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 PXNP49023 591 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 BIDP55957 195 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 ZADH2Q8N4Q0 377 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 GAB3Q8WWW8 586 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 ARV1Q9H2C2 271 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 H3BQ06 376 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 HSD17B6O14756 317 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 CNIH1O95406 144 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 RAB6CQ53S08 254 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 DPPA2Q7Z7J5 298 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 DUSP19Q8WTR2 217 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 LCORQ96JN0 433 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC46A1Q96NT5 459 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 MKRN2Q9H000 416 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 RAB6CQ9H0N0 254 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 A6NIN4 97 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 PHF1O43189 567 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 CR2P20023 1033 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 CTSCP53634 463 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 SIRPAP78324 504 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 SMAD2Q15796 467 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 PLK5Q496M5 336 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 PIWIL3Q7Z3Z3 882 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 SHARPINQ9H0F6 387 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 ZCCHC4Q9H5U6 513 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 METTL17Q9H7H0 456 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 PATZ1Q9HBE1 687 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 KCND3Q9UK17 655 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 UBR2Q8IWV8 1755 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 GABREP78334 506 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 DEFA6Q01524 100 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 RELAQ04206 551 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 SYT13Q7L8C5 426 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 OVCH1Q7RTY7 1134 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 RNF141Q8WVD5 230 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 TMEM40Q8WWA1 233 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 EGLN1Q9GZT9 426 aa11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 EXOSC3Q9NQT5 275 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 PURGQ9UJV8 347 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-204ENST00000389857 TMED7-TICAM2A0A0A6YYA0 188 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 SGCEO43556 437 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 GASTP01350 101 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 CNR1P21554 472 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC5A2P31639 672 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 PPT1P50897 306 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 MAT1AQ00266 395 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 PIANPQ8IYJ0 282 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 SCCPDHQ8NBX0 429 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 HRASLS5Q96KN8 279 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 PSD2Q9BQI7 771 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 NIPSNAP3BQ9BS92 247 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 IL37Q9NZH6 218 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 MRPS2Q9Y399 296 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 TMED7Q9Y3B3 224 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 ARHGAP33O14559 1287 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 ADH4P08319 380 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 OR8G3PP0DMU2 310 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 PTGER1P34995 402 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 MTNR1BP49286 362 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 EXT1Q16394 746 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 DBX2Q6ZNG2 339 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC29A1Q99808 456 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 BARHL1Q9BZE3 327 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 WWTR1Q9GZV5 400 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 RAB22AQ9UL26 194 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 MMACHCQ9Y4U1 282 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 H0Y8G0 127 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 RFXAPO00287 272 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 BHLHE40O14503 412 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 B4GAT1O43505 415 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 TRHRP34981 398 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 FXNQ16595 210 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 GDPD3Q7L5L3 318 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 MDGA2Q7Z553 956 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 KLHDC8BQ8IXV7 354 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 KDF1Q8NAX2 398 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 Q499Y3 187 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 HLA-CQ95604 372 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 MRPL38Q96DV4 380 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 OR11A1Q9GZK7 315 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 TMEM72A0PK05 275 aa11.85□□□□□ -0.51
CCDC88C-204ENST00000389857 KRBOX1C9JBD0 128 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms