RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ACTR3CQ9C0K3 210 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-203ENST00000353578 GPR52Q9Y2T5 361 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 CEBPZOSA8MTT3 80 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 RNASEK-C17orf49H0YIS7 233 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 GPR32O75388 356 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 CSO75390 466 aaKnown RBP11.74□□□□□ -0.53
COL6A3-203ENST00000353578 ATP1B3P54709 279 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 TAS1R3Q7RTX0 852 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 OR5L1Q8NGL2 311 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 FAAP24Q9BTP7 215 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 LRIT1Q9P2V4 623 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 UNC13CQ8NB66 2214 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 SCN5AQ14524 2016 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 CSNK1A1P48729 337 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 NOVA1P51513 510 aaKnown RBP11.74□□□□□ -0.53
COL6A3-203ENST00000353578 RNLSQ5VYX0 342 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 TMEM239Q8WW34 195 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 NTNG2Q96CW9 530 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 YIPF6Q96EC8 236 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 ATP5SQ99766 215 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 CXorf65A6NEN9 183 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 EOMESO95936 686 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 ALDOCP09972 364 aaKnown RBP11.74□□□□□ -0.53
COL6A3-203ENST00000353578 RAB7BQ96AH8 199 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 CREBZFQ9NS37 354 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 YARS2Q9Y2Z4 477 aaKnown RBP11.74□□□□□ -0.53
COL6A3-203ENST00000353578 OR10J1P30954 320 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 CFAP52Q8N1V2 620 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 CT45A10P0DMU9 189 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 LAMP1P11279 417 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 SAMD8Q96LT4 415 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 MARVELD1Q9BSK0 173 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 HEATR5AQ86XA9 2040 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 ADH5P11766 374 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 HNRNPA2B1P22626 353 aaKnown RBP11.73□□□□□ -0.53
COL6A3-203ENST00000353578 GDI1P31150 447 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 HLA-BQ31612 363 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 RAB8BQ92930 207 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 FGFBP2Q9BYJ0 223 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 MMP24Q9Y5R2 645 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 MYO16Q9Y6X6 1858 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 RREB1Q92766 1687 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 TRAV1-2A0A0B4J238 106 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 FPR3P25089 353 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 NANOGP1Q8N7R0 232 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 SUCNR1Q9BXA5 334 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 GDF2Q9UK05 429 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-203ENST00000353578 FAM74A7A6NL05 159 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 CCL22O00626 93 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 ACOT8O14734 319 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 TXNDC12O95881 172 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 CST4P01036 141 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 SFRP5Q5T4F7 317 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 FAM180BQ6P0A1 224 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 A0A087WUU8 490 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 CCDC187A0A096LP49 1063 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 M0R2Z0 102 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 SLC2A1P11166 492 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 NQO2P16083 231 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 PMCHP20382 165 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 RPS25P62851 125 aaKnown RBP11.73□□□□□ -0.53
COL6A3-203ENST00000353578 VASNQ6EMK4 673 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 LCN10Q6JVE6 187 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF547Q8IVP9 402 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 ABHD4Q8TB40 342 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 MRPS23Q9Y3D9 190 aaKnown RBP11.73□□□□□ -0.53
COL6A3-203ENST00000353578 OR5K4A6NMS3 321 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 ASGR2P07307 311 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 EPXP11678 715 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 AGTR2P50052 363 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 PABPC1L2AQ5JQF8 200 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 FAM209AQ5JX71 171 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 DGAT2L6Q6ZPD8 337 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 COMMD6Q7Z4G1 85 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 GPR87Q9BY21 358 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 PLK3Q9H4B4 646 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 IL36AQ9UHA7 158 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 TBC1D3DA0A087WVF3 549 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 TBC1D3IA0A087WXS9 549 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 TBC1D3EA0A087X179 549 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 PQLC2LA1A4F0 135 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 TBC1D3LB9A6J9 549 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 SLC16A7O60669 478 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 TBC1D3HP0C7X1 549 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 APEX1P27695 318 aaKnown RBP11.73□□□□□ -0.53
COL6A3-203ENST00000353578 P2RX1P51575 399 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 SUB1P53999 127 aaKnown RBP eCLIP11.73□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF345Q14585 488 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 TBC1D3CQ6IPX1 549 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 TBC1D3Q8IZP1 549 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-203ENST00000353578 UBTD2Q8WUN7 234 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 SMIM3Q9BZL3 60 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 ECM29Q5VYK3 1845 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 SNRPEP62304 92 aaKnown RBP11.73□□□□□ -0.53
COL6A3-203ENST00000353578 WBP2NLQ6ICG8 309 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 WDR74Q6RFH5 385 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-203ENST00000353578 DYRK2Q92630 601 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 CSNK1G1Q9HCP0 422 aa11.73□□□□□ -0.53
COL6A3-203ENST00000353578 OTOL1A6NHN0 477 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 CHEK1O14757 476 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms