RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CPED1A4D0V7 1026 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 GGT3PA6NGU5 568 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 COLCA2A8K830 154 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 LEFTY2O00292 366 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 PEX12O00623 359 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 YKT6O15498 198 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 SSX5O60225 188 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 RPN2P04844 631 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 HEXAP06865 529 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 NGFRP08138 427 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ZNF806P0C7X5 589 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 SLC25A4P12235 298 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 GABRR2P28476 465 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 DLSTP36957 453 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 CASRP41180 1078 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ATP1B3P54709 279 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 SNRPNP63162 240 aaKnown RBP6.2□□□□□ -1.42
VPS39-202ENST00000348544 SRSF4Q08170 494 aaKnown RBP6.2□□□□□ -1.42
VPS39-202ENST00000348544 ECH1Q13011 328 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 KCNAB1Q14722 419 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 CEBPEQ15744 281 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ZIC1Q15915 447 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 HYAL4Q2M3T9 481 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 UNQ6126/PRO20091Q6UXV3 157 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 FAM122BQ7Z309 247 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 TMCO2Q7Z6W1 182 aaPredicted RBP6.2□□□□□ -1.42
VPS39-202ENST00000348544 POMGNT2Q8NAT1 580 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 CLEC1AQ8NC01 280 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 OR4K14Q8NGD5 310 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 OR1J2Q8NGS2 313 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 PHOSPHO1Q8TCT1 267 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 GRHL3Q8TE85 626 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ING5Q8WYH8 240 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 SEC22AQ96IW7 307 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 MRGPRX3Q96LB0 322 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 Q96M85 177 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 SDF2Q99470 211 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 PDCD10Q9BUL8 212 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ALX4Q9H161 411 aaPredicted RBP6.2□□□□□ -1.42
VPS39-202ENST00000348544 NIT2Q9NQR4 276 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 TM7SF3Q9NS93 570 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 CHRNA9Q9UGM1 479 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 SERTAD3Q9UJW9 196 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ABT1Q9ULW3 272 aaKnown RBP6.2□□□□□ -1.42
VPS39-202ENST00000348544 CCL26Q9Y258 94 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 MED31Q9Y3C7 131 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 TET1Q8NFU7 2136 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 A0A1B0GTH9 108 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 C17orf113A0A1B0GUU1 675 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 TMEM82A0PJX8 343 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 PMS2P1A4D2B8 440 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 OR14I1A6ND48 311 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 C5orf52A6NGY3 159 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 FADS1O60427 444 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 CTAG2O75638 210 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 PMS2P2O95744 297 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ANXA2P07355 339 aaKnown RBP6.2□□□□□ -1.42
VPS39-202ENST00000348544 ABOP16442 354 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 GPR143P51810 404 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 DUSP8Q13202 625 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 TAF13Q15543 124 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ZNF684Q5T5D7 378 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 STEAP1BQ6NZ63 245 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 C3orf33Q6P1S2 294 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ARHGAP11AQ6P4F7 1023 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ABHD17CQ6PCB6 329 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 C5orf46Q6UWT4 87 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ACOT7LQ6ZUV0 252 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 USP53Q70EK8 1073 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 PGAP1Q75T13 922 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 TMED4Q7Z7H5 227 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 NPAS4Q8IUM7 802 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 NRSN1Q8IZ57 195 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 CRIPAKQ8N1N5 446 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 OR5K2Q8NHB8 316 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ELP5Q8TE02 316 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 DOK4Q8TEW6 326 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 PAQR8Q8TEZ7 354 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 C15orf40Q8WUR7 153 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 PPP1R1CQ8WVI7 109 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 INTS12Q96CB8 462 aaKnown RBP6.2□□□□□ -1.42
VPS39-202ENST00000348544 FBXO17Q96EF6 278 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 MRI1Q9BV20 369 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 SEBOXQ9HB31 216 aaPredicted RBP6.2□□□□□ -1.42
VPS39-202ENST00000348544 TCF7L1Q9HCS4 588 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 ZNF346Q9UL40 294 aaKnown RBP6.2□□□□□ -1.42
VPS39-202ENST00000348544 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.2□□□□□ -1.42
VPS39-202ENST00000348544 ADAM18Q9Y3Q7 739 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 INSL5Q9Y5Q6 135 aa6.2□□□□□ -1.42
VPS39-202ENST00000348544 EML5Q05BV3 1969 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 TRAV18A0A075B6X5 111 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 A0A1B0GVT2 93 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 A0A1W2PPE3 182 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 EFCAB7A8K855 629 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 F5H0A9 414 aaPredicted RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 H3BSH0 61 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 IFNGP01579 166 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 IGHV2-70P01814 119 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 MAS1P04201 325 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 MELTFP08582 738 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms