RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CCNL2Q96S94 520 aaPredicted RBP17.58■□□□□ 0.4
COL9A3-201ENST00000343916 ANKRD10Q9NXR5 420 aa17.58■□□□□ 0.4
COL9A3-201ENST00000343916 CACNG2Q9Y698 323 aa17.58■□□□□ 0.4
COL9A3-201ENST00000343916 WDR87Q6ZQQ6 2873 aa17.58■□□□□ 0.4
COL9A3-201ENST00000343916 VPS13AQ96RL7 3174 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 ANKRD61A6NGH8 418 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 C11orf98E9PRG8 122 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 H3BSH0 61 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 FBLP22087 321 aaKnown RBP17.57■□□□□ 0.4
COL9A3-201ENST00000343916 ERP29P30040 261 aaKnown RBP17.57■□□□□ 0.4
COL9A3-201ENST00000343916 HLA-DQA1Q5Y7H0 255 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 LANCL3Q6ZV70 420 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 SLC25A45Q8N413 288 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 SNAPC3Q92966 411 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 DPYSL5Q9BPU6 564 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 LAT2Q9GZY6 243 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 ADAM19Q9H013 955 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 SYT4Q9H2B2 425 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 ZCCHC4Q9H5U6 513 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 TEKT2Q9UIF3 430 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 MRTO4Q9UKD2 239 aaKnown RBP17.57■□□□□ 0.4
COL9A3-201ENST00000343916 ZNF281Q9Y2X9 895 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 TRAV6A0A075B6T7 132 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 CLDN12P56749 244 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 ARPC4P59998 168 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 PLCXD2Q0VAA5 305 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 NTRK2Q16620 822 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 BTBD16Q32M84 506 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 ARHGAP40Q5TG30 622 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 YIPF5Q969M3 257 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 CREB3L1Q96BA8 519 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 MVB12AQ96EY5 273 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 ADAD1Q96M93 576 aaKnown RBP17.57■□□□□ 0.4
COL9A3-201ENST00000343916 MESP1Q9BRJ9 268 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 VN1R1Q9GZP7 353 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 WDR76Q9H967 626 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 ABRACLQ9P1F3 81 aa17.57■□□□□ 0.4
COL9A3-201ENST00000343916 MRM2Q9UI43 246 aaKnown RBP17.57■□□□□ 0.4
COL9A3-201ENST00000343916 ING1Q9UK53 422 aaPredicted RBP17.57■□□□□ 0.4
COL9A3-201ENST00000343916 CEP192Q8TEP8 1941 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 WDFY3Q8IZQ1 3526 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 ZNF879B4DU55 563 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 GZMKP49863 264 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 LIPNQ5VXI9 398 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 UNQ9370/PRO34162Q6UXP9 181 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 SLC16A9Q7RTY1 509 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 OVCH1Q7RTY7 1134 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 PLXDC1Q8IUK5 500 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 TIGD4Q8IY51 512 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 SLC25A36Q96CQ1 311 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 FOXN4Q96NZ1 517 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 GON7Q9BXV9 100 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 NUDT15Q9NV35 164 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 CTSFQ9UBX1 484 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 SOX1O00570 391 aaPredicted RBP17.56■□□□□ 0.4
COL9A3-201ENST00000343916 DUX1O43812 170 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 UBL3O95164 117 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 PLGP00747 810 aaPredicted RBP17.56■□□□□ 0.4
COL9A3-201ENST00000343916 IGF2P01344 180 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 APEHP13798 732 aaKnown RBP17.56■□□□□ 0.4
COL9A3-201ENST00000343916 CXCR1P25024 350 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 EVI2BP34910 448 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 SLC25A1P53007 311 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 RRAS2P62070 204 aaPredicted RBP17.56■□□□□ 0.4
COL9A3-201ENST00000343916 HSF2Q03933 536 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 BCL2L15Q5TBC7 163 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 DPY19L4Q7Z388 723 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 D2HGDHQ8N465 521 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 OR6N2Q8NGY6 317 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 DEDD2Q8WXF8 326 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 GCDHQ92947 438 aaPredicted RBP17.56■□□□□ 0.4
COL9A3-201ENST00000343916 MRPL48Q96GC5 212 aaKnown RBP17.56■□□□□ 0.4
COL9A3-201ENST00000343916 TBL1XR1Q9BZK7 514 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 WWTR1Q9GZV5 400 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 SPATA2Q9UM82 520 aa17.56■□□□□ 0.4
COL9A3-201ENST00000343916 IGHV3-20A0A0C4DH32 117 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 ARHGEF9O43307 516 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 NUDT21O43809 227 aaKnown RBP17.55■□□□□ 0.4
COL9A3-201ENST00000343916 GPRIN2O60269 458 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 UPK3AO75631 287 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 AKR7A3O95154 331 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 HIST1H2ABP04908 130 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 ABCD3P28288 659 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 HIST3H2AQ7L7L0 130 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 PM20D2Q8IYS1 436 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 TOMM5Q8N4H5 51 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 HIST1H2ACQ93077 130 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 OMA1Q96E52 524 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 NUDT22Q9BRQ3 303 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.55■□□□□ 0.43e-6■■■□□ 14.6
COL9A3-201ENST00000343916 AUNIPQ9H7T9 357 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 FRRS1LQ9P0K9 344 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 TSPAN2O60636 221 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 CD1AP06126 327 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 SOX2P48431 317 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 ODF4Q2M2E3 257 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 STPG1Q5TH74 334 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 C16orf47Q6ZP98 133 aaPredicted RBP17.55■□□□□ 0.4
COL9A3-201ENST00000343916 SIAH3Q8IW03 269 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 RPS4Y2Q8TD47 263 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms