RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CD163Q86VB7 1156 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 BBS1Q8NFJ9 593 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 OR5AP2Q8NGF4 316 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 OR5R1Q8NH85 324 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 GPBAR1Q8TDU6 330 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 DUSP19Q8WTR2 217 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 UBE2E3Q969T4 207 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 SLC35G5Q96KT7 338 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 HS6ST2Q96MM7 605 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 SULT4A1Q9BR01 284 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 C16orf70Q9BSU1 422 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 NAA11Q9BSU3 229 aaPredicted RBP7.46□□□□□ -1.21
ATG4A-201ENST00000343524 MRPL37Q9BZE1 423 aaKnown RBP7.46□□□□□ -1.21
ATG4A-201ENST00000343524 WDR13Q9H1Z4 485 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 TRPV4Q9HBA0 871 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 KLHL28Q9NXS3 571 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 HAO2Q9NYQ3 351 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 AHSPQ9NZD4 102 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 MARCH2Q9P0N8 246 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 ST6GALNAC2Q9UJ37 374 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 TMED3Q9Y3Q3 217 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 V9GY05 133 aa7.46□□□□□ -1.21
ATG4A-201ENST00000343524 REV3LO60673 3130 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 A0A1W2PPE3 182 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 TVP23AA6NH52 213 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 IDSB3KWA1 339 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 HMGN4O00479 90 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 GMFGO60234 142 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 ETHE1O95571 254 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 CH25HO95992 272 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 RNH1P13489 461 aaKnown RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 GTF2F2P13984 249 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 NME1P15531 152 aaKnown RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 PAX1P15863 534 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 ACKR3P25106 362 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 NDUFS1P28331 727 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 ACVR1BP36896 505 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 SLC26A5P58743 744 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 TAS2R50P59544 299 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 NHLH2Q02577 135 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 COTL1Q14019 142 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 COL9A2Q14055 689 aaPredicted RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 RBM39Q14498 530 aaKnown RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 PPA1Q15181 289 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 TAF13Q15543 124 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 CSRP2Q16527 193 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 MRM1Q6IN84 353 aaKnown RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 PWWP2BQ6NUJ5 590 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 FAAP20Q6NZ36 180 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 PLBD1Q6P4A8 553 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 PAPD4Q6PIY7 484 aaKnown RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 ETV3LQ6ZN32 361 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 TPGS1Q6ZTW0 290 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 FCRLAQ7L513 359 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 DMRTC2Q8IXT2 367 aaPredicted RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 GALNT16Q8N428 558 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 BEND2Q8NDZ0 799 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 C17orf47Q8NEP4 570 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 OR4K17Q8NGC6 315 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 OR1J1Q8NGS3 322 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 SMPDL3AQ92484 453 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 SMPDL3BQ92485 455 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 SMIM8Q96KF7 97 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 RHOVQ96L33 236 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 LRFN5Q96NI6 719 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 MICU1Q9BPX6 476 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 C1QTNF2Q9BXJ5 285 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 ATG10Q9H0Y0 220 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 ATG5Q9H1Y0 275 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 RGCCQ9H4X1 137 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 LMAN1LQ9HAT1 526 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 SPG21Q9NZD8 308 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 CNIH4Q9P003 139 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 CACFD1Q9UGQ2 172 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 ZNF107Q9UII5 783 aaPredicted RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 GDF2Q9UK05 429 aaPredicted RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 CDV3Q9UKY7 258 aaKnown RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 AK6Q9Y3D8 172 aaKnown RBP7.46□□□□□ -1.22
ATG4A-201ENST00000343524 ZNF337Q9Y3M9 751 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 PCDHGA1Q9Y5H4 931 aa7.46□□□□□ -1.22
ATG4A-201ENST00000343524 EPG5Q9HCE0 2579 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 XIRP2A4UGR9 3374 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 USP34Q70CQ2 3546 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 A0A0D9SEW6 157 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.45□□□□□ -1.22
ATG4A-201ENST00000343524 UNC119BA6NIH7 251 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 A6NLC8 198 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 MBTPS2O43462 519 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 XRCC3O43542 346 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 CATP04040 527 aaKnown RBP7.45□□□□□ -1.22
ATG4A-201ENST00000343524 CD5P06127 495 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 CTSLP07711 333 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 SPARCP09486 303 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 BMP7P18075 431 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 SRMP19623 302 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 S1PR1P21453 382 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 CDK2P24941 298 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 PYCR1P32322 319 aa7.45□□□□□ -1.22
ATG4A-201ENST00000343524 MANFP55145 182 aaKnown RBP7.45□□□□□ -1.22
ATG4A-201ENST00000343524 TAS2R19P59542 299 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms