RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 OXNAD1Q96HP4 312 aaPredicted RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 HMG20AQ9NP66 347 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 VSX1Q9NZR4 365 aaPredicted RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 THYN1Q9P016 225 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 GNG8Q9UK08 70 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 C14orf166Q9Y224 244 aaKnown RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 SSUH2Q9Y2M2 353 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 B4DXG7 233 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 NRP2O60462 931 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 SDC1P18827 310 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 PITPNAQ00169 270 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 SH2D5Q6ZV89 423 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 OR5R1Q8NH85 324 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 NPRL2Q8WTW4 380 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 HOPXQ9BPY8 73 aaPredicted RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 GAL3ST2Q9H3Q3 398 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 DDX31Q9H8H2 851 aaKnown RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 NTN4Q9HB63 628 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF850A8MQ14 1090 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF879B4DU55 563 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 NOBOXO60393 691 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 TFP02787 698 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 ANXA8P13928 327 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 RBM20Q5T481 1227 aaKnown RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 PAQR9Q6ZVX9 377 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 CMTM1Q8IZ96 169 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 SFXN5Q8TD22 340 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 CDS1Q92903 461 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 ROPN1LQ96C74 230 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 TBX5Q99593 518 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 UNKLQ9H9P5 680 aaKnown RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 GP6Q9HCN6 339 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 SPAG4Q9NPE6 437 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 GPR45Q9Y5Y3 372 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 NRAPQ86VF7 1730 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 BRWD3Q6RI45 1802 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 PHIPQ8WWQ0 1821 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 RGPD5Q99666 1765 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 LRRK2Q5S007 2527 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 A0A0U1RQK1 487 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 hADV38S2A0JD32 116 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF320A2RRD8 509 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 SNX3O60493 162 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 SLC16A7O60669 478 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 HMGN2P05204 90 aaKnown RBP7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CTSLP07711 333 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CT45A6P0DMU7 189 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CT45A5P0DMU8 189 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CT45A7P0DMV0 189 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CT45A8P0DMV1 189 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CT45A9P0DMV2 189 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 APOBEC3AP31941 199 aaPredicted RBP7.63□□□□□ -1.19
HMGB1-203ENST00000341423 SUB1P53999 127 aaKnown RBP eCLIP7.63□□□□□ -1.191e-6■■■■■ 36.5
HMGB1-203ENST00000341423 CT45A2Q5DJT8 189 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 RABL3Q5HYI8 236 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CT45A1Q5HYN5 189 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 SLC25A30Q5SVS4 291 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CT45A3Q8NHU0 189 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 INPP5KQ9BT40 448 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 TMEM231Q9H6L2 316 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF391Q9UJN7 358 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 AKR7A3O95154 331 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 RLN2P04090 185 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 ADRA2AP08913 450 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 PTNP21246 168 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF628Q5EBL2 1059 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 FAM69AQ5T7M9 428 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 C1orf140Q5VVS0 124 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 SLC16A13Q7RTY0 426 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 IRF2BP2Q7Z5L9 587 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 DOLPP1Q86YN1 238 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 C2CD4AQ8NCU7 369 aaPredicted RBP7.63□□□□□ -1.19
HMGB1-203ENST00000341423 OR10G3Q8NGC4 313 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 MARK4Q96L34 752 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 MCUBQ9NWR8 336 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 PCDHA9Q9Y5H5 950 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CAPN6Q9Y6Q1 641 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 LOC102723996A0A087X1L8 192 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 B4DSR2 109 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 J3QRK9 145 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 BHLHE40O14503 412 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 ADARB1P78563 741 aaKnown RBP7.63□□□□□ -1.19
HMGB1-203ENST00000341423 PLAURQ03405 335 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 TUBA3CQ13748 450 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 SNTB1Q13884 538 aaKnown RBP7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CEACAM16Q2WEN9 425 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 GAB4Q2WGN9 574 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 TUBA3EQ6PEY2 450 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 RFLNAQ6ZTI6 216 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 CMIPQ8IY22 773 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 GPR150Q8NGU9 434 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 SMOXQ9NWM0 555 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 ACTR3BQ9P1U1 418 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 MEMO1Q9Y316 297 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 A0A1W2PQM1 296 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 FAM25EA8MYX2 175 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 FAM153BP0C7A2 387 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 ANXA3P12429 323 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 TMEM11P17152 192 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 WDR4P57081 412 aaKnown RBP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms