RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 MELKQ14680 651 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 TRAM1Q15629 374 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 ELAVL1Q15717 326 aaKnown RBP9.39□□□□□ -0.91
LIMA1-201ENST00000341247 STPG1Q5TH74 334 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 PTCRAQ6ISU1 281 aaPredicted RBP9.39□□□□□ -0.91
LIMA1-201ENST00000341247 SLC29A4Q7RTT9 530 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 FAM122BQ7Z309 247 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 TPRA1Q86W33 373 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 C17orf82Q86X59 251 aaPredicted RBP9.39□□□□□ -0.91
LIMA1-201ENST00000341247 FAM71CQ8NEG0 241 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 BEST4Q8NFU0 473 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 GPR119Q8TDV5 335 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 RGP1Q92546 391 aaPredicted RBP9.39□□□□□ -0.91
LIMA1-201ENST00000341247 PHF21AQ96BD5 680 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 AMELYQ99218 206 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 WWTR1Q9GZV5 400 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 HIF3AQ9Y2N7 669 aa9.39□□□□□ -0.91
LIMA1-201ENST00000341247 MRPS17Q9Y2R5 130 aaKnown RBP9.39□□□□□ -0.91
LIMA1-201ENST00000341247 SHISA8B8ZZ34 492 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 SEC14L5O43304 696 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 MT-ND4P03905 459 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 FBXO45P0C2W1 286 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 ASAH2BP0C7U1 165 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 GALP22466 123 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 SMAD2Q15796 467 aaKnown RBP9.38□□□□□ -0.91
LIMA1-201ENST00000341247 MEP1BQ16820 701 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 OGFOD3Q6PK18 319 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 LINGO2Q7L985 606 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 FAM220AQ7Z4H9 259 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 SYS1Q8N2H4 156 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 TOMM5Q8N4H5 51 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 C1orf216Q8TAB5 229 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 DAZLQ92904 295 aaKnown RBP9.38□□□□□ -0.91
LIMA1-201ENST00000341247 PPP1R14AQ96A00 147 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 KCNJ15Q99712 375 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 NMNAT2Q9BZQ4 307 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 MRM2Q9UI43 246 aaKnown RBP9.38□□□□□ -0.91
LIMA1-201ENST00000341247 VDAC3Q9Y277 283 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 IGKV3D-11A0A0A0MRZ8 115 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 H3BMH7 237 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 ORC5O43913 435 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 TIAF1O95411 115 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 GIFP27352 417 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 RBMS1P29558 406 aaKnown RBP9.38□□□□□ -0.91
LIMA1-201ENST00000341247 EVI2BP34910 448 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 BICRALQ6AI39 1079 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 FCRLAQ7L513 359 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 SIAH3Q8IW03 269 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 SLC38A9Q8NBW4 561 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 OR51A4Q8NGJ6 313 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 METTL21AQ8WXB1 218 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 TRIM63Q969Q1 353 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 CCDC74AQ96AQ1 378 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 MSANTD3Q96H12 275 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 GAL3ST1Q99999 423 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 UCK1Q9HA47 277 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 MOV10Q9HCE1 1003 aaKnown RBP9.38□□□□□ -0.91
LIMA1-201ENST00000341247 KCNG2Q9UJ96 466 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 MRTO4Q9UKD2 239 aaKnown RBP9.38□□□□□ -0.91
LIMA1-201ENST00000341247 MMACHCQ9Y4U1 282 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 CACNG2Q9Y698 323 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 TCRBV16S1A1N1A0A5B0 115 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 HLA-DQB1P01920 261 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 FAM157BP0CG42 384 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 IL11P20809 199 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 DHPSP49366 369 aaPredicted RBP9.38□□□□□ -0.91
LIMA1-201ENST00000341247 GGTLC2Q14390 218 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 LRRN1Q6UXK5 716 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 NOXA1Q86UR1 476 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 LRRC75AQ8NAA5 344 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 CADM4Q8NFZ8 388 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 NSMAFQ92636 917 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 DUSP15Q9H1R2 295 aaPredicted RBP9.38□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF281Q9Y2X9 895 aa9.38□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF879B4DU55 563 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 SUSD5O60279 629 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF354AO60765 605 aaPredicted RBP9.37□□□□□ -0.91
LIMA1-201ENST00000341247 UCHL1P09936 223 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 GP1BBP13224 206 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 AFF3P51826 1226 aaKnown RBP9.37□□□□□ -0.91
LIMA1-201ENST00000341247 CLDN20P56880 219 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 FBXW4P57775 412 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 SQSTM1Q13501 440 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 CMTM4Q8IZR5 234 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 OR1F2PQ96R84 312 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 GFI1Q99684 422 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 EVA1AQ9H8M9 152 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 PRDM6Q9NQX0 595 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 ZDBF2Q9HCK1 2354 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 FREM3P0C091 2139 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 A0A1B0GX78 115 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 XKRYO14609 159 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 GDF9O60383 454 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 SLC43A1O75387 559 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 ZSWIM7Q19AV6 140 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 Q5BKY6 102 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 SLC6A19Q695T7 634 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 SFRP4Q6FHJ7 346 aaPredicted RBP9.37□□□□□ -0.91
LIMA1-201ENST00000341247 PYHIN1Q6K0P9 492 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 Q7L0L9 218 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms