RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MFAP5Q13361 173 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 SCGB2B2Q4G0G5 96 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 PMF1-BGLAPU3KQ54 211 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 hCG_1809904A0A1W2PP81 198 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 A0A1W2PPE2 198 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 A0A1W2PR64 198 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 A0A1W2PRV1 198 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 IFNA21P01568 189 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 CRYAAP02489 173 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 SLC2A2P11168 524 aaPredicted RBP9.26□□□□□ -0.93
USP54-201ENST00000339859 RAD52P43351 418 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 GPR176Q14439 515 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 ABHD5Q8WTS1 349 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 SIRT5Q9NXA8 310 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 CNOT2Q9NZN8 540 aaKnown RBP9.26□□□□□ -0.93
USP54-201ENST00000339859 VSX1Q9NZR4 365 aaPredicted RBP9.26□□□□□ -0.93
USP54-201ENST00000339859 SORBS2O94875 1100 aaKnown RBP9.26□□□□□ -0.93
USP54-201ENST00000339859 T-ENOLP0DO92 83 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 HNRNPA0Q13151 305 aaKnown RBP9.26□□□□□ -0.93
USP54-201ENST00000339859 SPINK14Q6IE38 97 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 ZNF584Q8IVC4 421 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 ANKRD9Q96BM1 317 aaPredicted RBP9.26□□□□□ -0.93
USP54-201ENST00000339859 C10orf90Q96M02 699 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 MGLLQ99685 303 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 GALNT9Q9HCQ5 603 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 DUSP13Q9UII6 198 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 FAM90A27PA6NNH2 459 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 VGLL3A8MV65 326 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 LRRTM2O43300 516 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 SGCEO43556 437 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 UBL3O95164 117 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 IGHV3-9P01782 118 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 GABRA2P47869 451 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 RAB2AP61019 212 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 PLET1Q6UQ28 207 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 TNFAIP8L1Q8WVP5 186 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 ROBO4Q8WZ75 1007 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 NMNAT3Q96T66 252 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 KCNN3Q9UGI6 736 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 PRDM4Q9UKN5 801 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 GPR55Q9Y2T6 319 aaPredicted RBP9.25□□□□□ -0.93
USP54-201ENST00000339859 NUMA1Q14980 2115 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 A0A1W2PPK0 400 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 PRKYO43930 277 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 QDPRP09417 244 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 LINC00271P0C7V0 271 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 ADH7P40394 386 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 NXNL2Q5VZ03 156 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 PRR7Q8TB68 274 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 C4orf36Q96KX1 117 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 BARD1Q99728 777 aaKnown RBP9.25□□□□□ -0.93
USP54-201ENST00000339859 MRI1Q9BV20 369 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 SLC5A7Q9GZV3 580 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 TET1Q8NFU7 2136 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 FNDC1Q4ZHG4 1894 aaPredicted RBP9.25□□□□□ -0.93
USP54-201ENST00000339859 TEX51A0A1B0GUA7 166 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 LRRN3E7EW58 273 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 CRTAPO75718 401 aaPredicted RBP9.25□□□□□ -0.93
USP54-201ENST00000339859 ANXA3P12429 323 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 AMY2BP19961 511 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 CHMP24386 653 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 MAP2K3P46734 347 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 PITPNBP48739 271 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 MLF1P58340 268 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 TEKQ02763 1124 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 PIGFQ07326 219 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 DNAJB6O75190 326 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 OR2T7P0C7T2 308 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 PRR35P0CG20 571 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 YBX1P67809 324 aaKnown RBP9.25□□□□□ -0.93
USP54-201ENST00000339859 TUBA3EQ6PEY2 450 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 MAMSTRQ6ZN01 415 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 OR2T27Q8NH04 317 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 NPRL2Q8WTW4 380 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 RND1Q92730 232 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 SLC22A11Q9NSA0 550 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 IGHV1-45A0A0A0MS14 117 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 IGHV3-15A0A0B4J1V0 119 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 PRKNO60260 465 aaPredicted RBP9.25□□□□□ -0.93
USP54-201ENST00000339859 ATG12O94817 140 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 GLCEO94923 617 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 TMIGD3P0DMS9 266 aaPredicted RBP9.25□□□□□ -0.93
USP54-201ENST00000339859 RAB3BP20337 219 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 CA5AP35218 305 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 RTL6Q6ICC9 239 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 OR7E24Q6IFN5 339 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 ABHD4Q8TB40 342 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 SCP2D1Q9UJQ7 156 aa9.25□□□□□ -0.93
USP54-201ENST00000339859 SNPHO15079 494 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 PTGER4P35408 488 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 GIPRP48546 466 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 OR8B8Q15620 311 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 NPSR1Q6W5P4 371 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 VRK1Q99986 396 aaPredicted RBP9.24□□□□□ -0.93
USP54-201ENST00000339859 CXorf56Q9H5V9 222 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 MAN2C1Q9NTJ4 1040 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 NDUFAF4Q9P032 175 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 KCNG2Q9UJ96 466 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 TCRBV16S1A1N1A0A5B0 115 aa9.24□□□□□ -0.93
USP54-201ENST00000339859 L7N2F9 121 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms