RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 LINC01553A4QN01 128 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 UBBP0CG47 229 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 UBCP0CG48 685 aaKnown RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 CDK2P24941 298 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 HTR2CP28335 458 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 RPS27AP62979 156 aaKnown RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 UBA52P62987 128 aaKnown RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 CBFBQ13951 182 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 CARD17Q5XLA6 110 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 ZNF770Q6IQ21 691 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 SLC51BQ86UW2 128 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 BOLLQ8N9W6 283 aaKnown RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 CPNE2Q96FN4 548 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 TRMT61AQ96FX7 289 aaKnown RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 DERL3Q96Q80 235 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 AUNIPQ9H7T9 357 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 ANK1P16157 1881 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 TPOP07202 933 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 ADPRHP54922 357 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 TAGLNQ01995 201 aaKnown RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 TDGQ13569 410 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 TMEM31Q5JXX7 168 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 NKAPLQ5M9Q1 402 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 C19orf47Q8N9M1 422 aaKnown RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 C8orf33Q9H7E9 229 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 WSB2Q9NYS7 404 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 RGPD3A6NKT7 1758 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-201ENST00000323668 RGPD4Q7Z3J3 1758 aa13.54□□□□□ -0.24
TCOF1-201ENST00000323668 TAS2R20P59543 309 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 BEX5Q5H9J7 111 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 AGBL4Q5VU57 503 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 OR51Q1Q8NH59 317 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 DHRS1Q96LJ7 313 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 ERVMER34-1Q9H9K5 563 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 LCTP09848 1927 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 SDC3O75056 442 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 ATF1P18846 271 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 MC2RQ01718 297 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 DGLUCYQ7Z3D6 616 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 CDCA3Q99618 268 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-201ENST00000323668 NRTNQ99748 197 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 TDRD15B5MCY1 1934 aaKnown RBP13.53□□□□□ -0.24
TCOF1-201ENST00000323668 CKAP5Q14008 2032 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 hCG_1807616A0A1W2PRN6 198 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 FAM221BA6H8Z2 402 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 ANKRD61A6NGH8 418 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 MSL3P1P0C860 447 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 DAP3P51398 398 aaKnown RBP13.53□□□□□ -0.24
TCOF1-201ENST00000323668 TAS2R31P59538 309 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 SEC61A1P61619 476 aaKnown RBP13.53□□□□□ -0.24
TCOF1-201ENST00000323668 ACBD4Q8NC06 268 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 OR5D14Q8NGL3 314 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 ZNF578Q96N58 590 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-201ENST00000323668 SLC25A21Q9BQT8 299 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-201ENST00000323668 ULBP3Q9BZM4 244 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 C20orf141Q9NUB4 165 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 H0Y8X5 98 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 CDC42EP2O14613 210 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 DUX1O43812 170 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 SLC6A1P30531 599 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 CD79BP40259 229 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 GLP1RP43220 463 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 RAD52P43351 418 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 PLXDC1Q8IUK5 500 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 OR51S1Q8NGJ8 323 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 ANGPTL6Q8NI99 470 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 SCARB1Q8WTV0 552 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 DVL3Q92997 716 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-201ENST00000323668 PRRG4Q9BZD6 226 aa13.53□□□□□ -0.24
TCOF1-201ENST00000323668 C19orf25Q9UFG5 118 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-201ENST00000323668 LSM2Q9Y333 95 aaKnown RBP13.53□□□□□ -0.24
TCOF1-201ENST00000323668 BORCS7-ASMTA0A0B4J1R7 106 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 TNFRSF10CO14798 259 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 BRINP1O60477 761 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 GREM1O60565 184 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 GALR3O60755 368 aaPredicted RBP13.52□□□□□ -0.24
TCOF1-201ENST00000323668 ARRB1P49407 418 aaPredicted RBP13.52□□□□□ -0.24
TCOF1-201ENST00000323668 HNRNPKP61978 463 aaKnown RBP eCLIP13.52□□□□□ -0.24
TCOF1-201ENST00000323668 VAMP2P63027 116 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 RAB30Q15771 203 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 OR10K1Q8NGX5 313 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 TCTN2Q96GX1 697 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 SEC22AQ96IW7 307 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 ABHD1Q96SE0 405 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 EVA1BQ9NVM1 165 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 A0A1B0GUH1 482 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 RAB3AP20336 220 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 BCL2A1Q16548 175 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 YOD1Q5VVQ6 348 aaPredicted RBP13.52□□□□□ -0.24
TCOF1-201ENST00000323668 GPA33Q99795 319 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 DHRS9Q9BPW9 319 aa13.52□□□□□ -0.24
TCOF1-201ENST00000323668 SEC16AO15027 2179 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 H3BML4 177 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 TOR2AQ5JU69 321 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 OR2L13Q8N349 312 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 TMEM156Q8N614 296 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 OR1J4Q8NGS1 313 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 CCL4L1Q8NHW4 92 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 HOXB13Q92826 284 aaPredicted RBP13.52□□□□□ -0.25
TCOF1-201ENST00000323668 PNPLA2Q96AD5 504 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms