RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 MOB3CQ70IA8 216 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 LIX1LQ8IVB5 337 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 SLC22A24Q8N4F4 322 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 TM4SF18Q96CE8 201 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 STRADBQ9C0K7 418 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 SCML1Q9UN30 329 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 PCDHGA1Q9Y5H4 931 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 SEMA4FO95754 770 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 HBQ1P09105 142 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 FOLR1P15328 257 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 SLC19A1P41440 591 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 SRYQ05066 204 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 BRICD5Q6PL45 260 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 ALKAL1Q6UXT8 129 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF765Q7L2R6 523 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 MCATQ8IVS2 390 aaKnown RBP16.05■□□□□ 0.16
SYNPO-201ENST00000307662 ST8SIA2Q92186 375 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 PRSS16Q9NQE7 514 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 OR2F2O95006 317 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 CPT2P23786 658 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 OR2F1Q13607 317 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 ESPNLQ6ZVH7 1005 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 OR6M1Q8NGM8 313 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 MS4A8Q9BY19 250 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 CUTCQ9NTM9 273 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 ACER3Q9NUN7 267 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 C17orf112F2Z3M2 114 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF264O43296 627 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 PMP2P02689 132 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 FCGR2AP12318 317 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF44P15621 663 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 SLC35D3Q5M8T2 416 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 MSI2Q96DH6 328 aaKnown RBP16.05■□□□□ 0.16
SYNPO-201ENST00000307662 AMDHD1Q96NU7 426 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 TSSK2Q96PF2 358 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 VN1R3Q9BXE9 311 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 CHST8Q9H2A9 424 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 TAF9BQ9HBM6 251 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 HOXC11O43248 304 aaPredicted RBP16.05■□□□□ 0.16
SYNPO-201ENST00000307662 BMPR1AP36894 532 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 PDLIM3Q53GG5 364 aaPredicted RBP16.05■□□□□ 0.16
SYNPO-201ENST00000307662 ADAM5Q6NVV9 412 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 KCNRGQ8N5I3 272 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 LMNTD1Q8N9Z9 388 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 C1QTNF3Q9BXJ4 246 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 C1orf198Q9H425 327 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 GLIPR2Q9H4G4 154 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 RAB22AQ9UL26 194 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 PPT2Q9UMR5 302 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 KIF13AQ9H1H9 1805 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 ALS2Q96Q42 1657 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 C4AP0C0L4 1744 aa16.05■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF728P0DKX0 622 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 CD79AP11912 226 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 RNF4P78317 190 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 RDH10Q8IZV5 341 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 RNF170Q96K19 258 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 UHRF2Q96PU4 802 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 GPR55Q9Y2T6 319 aaPredicted RBP16.04■□□□□ 0.16
SYNPO-201ENST00000307662 TPPPO94811 219 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 CALCBP10092 127 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 GABRB1P18505 474 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 TACR3P29371 465 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 HOXC13P31276 330 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 GZMKP49863 264 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 HBG1P69891 147 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 HBG2P69892 147 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 FOXK1P85037 733 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 EXOSC2Q13868 293 aaKnown RBP16.04■□□□□ 0.16
SYNPO-201ENST00000307662 FAM71E1Q6IPT2 247 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 VASH1Q7L8A9 365 aaPredicted RBP16.04■□□□□ 0.16
SYNPO-201ENST00000307662 RIMKLAQ8IXN7 391 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 FAM26EQ8N5C1 309 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 HSD17B11Q8NBQ5 300 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 SLC39A9Q9NUM3 307 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 RNF212BA8MTL3 300 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 TRAPPC2LH3BP13 241 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 KITLGP21583 273 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 LAP3P28838 519 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 AQP6Q13520 282 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 CLINT1Q14677 625 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 LFNGQ8NES3 379 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 MUTYHQ9UIF7 546 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 CSF3P09919 207 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 BLVRBP30043 206 aaPredicted RBP16.04■□□□□ 0.16
SYNPO-201ENST00000307662 REEP5Q00765 189 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 SEMA3BQ13214 749 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 GLYR1Q49A26 553 aaPredicted RBP16.04■□□□□ 0.16
SYNPO-201ENST00000307662 NKAIN3Q8N8D7 197 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF680Q8NEM1 530 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 NLGN4YQ8NFZ3 816 aaPredicted RBP16.04■□□□□ 0.16
SYNPO-201ENST00000307662 ANKRD9Q96BM1 317 aaPredicted RBP16.04■□□□□ 0.16
SYNPO-201ENST00000307662 UFSP2Q9NUQ7 469 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 A0A1B0GWA3 101 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 MTHFD2P13995 350 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 ARNTP27540 789 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 TEAD1P28347 426 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 ECI1P42126 302 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 DCAF7P61962 342 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 GLYATL3Q5SZD4 288 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms