RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ZNF281Q9Y2X9 895 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 SLC6A5Q9Y345 797 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 ASCC3Q8N3C0 2202 aaKnown RBP18.2■□□□□ 0.5
VPS53-201ENST00000291074 OR6C70A6NIJ9 312 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 ZNF879B4DU55 563 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 CXCR1P25024 350 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 ABCD3P28288 659 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 C16orf47Q6ZP98 133 aaPredicted RBP18.2■□□□□ 0.5
VPS53-201ENST00000291074 PRSS45Q7RTY3 260 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 OVCH1Q7RTY7 1134 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 RPS4Y2Q8TD47 263 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 YIPF5Q969M3 257 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 MRPL48Q96GC5 212 aaKnown RBP18.2■□□□□ 0.5
VPS53-201ENST00000291074 TBL1XR1Q9BZK7 514 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 PCED1AQ9H1Q7 454 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 WDR76Q9H967 626 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 TEKT2Q9UIF3 430 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 MRPS17Q9Y2R5 130 aaKnown RBP18.2■□□□□ 0.5
VPS53-201ENST00000291074 ANKRD61A6NGH8 418 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 H3BSH0 61 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 RGS13O14921 159 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 GPRIN2O60269 458 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 AKR7A3O95154 331 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 TXNDC12O95881 172 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 PLGP00747 810 aaPredicted RBP18.2■□□□□ 0.5
VPS53-201ENST00000291074 CD1AP06126 327 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 GIMD1P0DJR0 217 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 SMAD2Q15796 467 aaKnown RBP18.2■□□□□ 0.5
VPS53-201ENST00000291074 LIPNQ5VXI9 398 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 CHRDL2Q6WN34 429 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 SIX5Q8N196 739 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 SLC25A36Q96CQ1 311 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 FOXN4Q96NZ1 517 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.2■□□□□ 0.5
VPS53-201ENST00000291074 FGF21Q9NSA1 209 aa18.2■□□□□ 0.5
VPS53-201ENST00000291074 TRAV6A0A075B6T7 132 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 UPK3AO75631 287 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 HIST1H2ABP04908 130 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 CLDN12P56749 244 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 NTRK2Q16620 822 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 HIST3H2AQ7L7L0 130 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 OR6N2Q8NGY6 317 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 DAZLQ92904 295 aaKnown RBP18.19■□□□□ 0.5
VPS53-201ENST00000291074 HIST1H2ACQ93077 130 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 CREB3L1Q96BA8 519 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 COPS7AQ9UBW8 275 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 CCDC85CA6NKD9 419 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 ARHGEF9O43307 516 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 BGLAPP02818 100 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 SLC6A8P48029 635 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 CDK10Q15131 360 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 PM20D2Q8IYS1 436 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 HAVCR2Q8TDQ0 301 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 OIT3Q8WWZ8 545 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 MAP6Q96JE9 813 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 SLC41A2Q96JW4 573 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 IKZF2Q9UKS7 526 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 SPATA2Q9UM82 520 aa18.19■□□□□ 0.5
VPS53-201ENST00000291074 A0A1B0GX78 115 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 SMLR1H3BR10 107 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 BCAT2O15382 392 aaPredicted RBP18.18■□□□□ 0.5
VPS53-201ENST00000291074 UBL3O95164 117 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 GLB1P16278 677 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 SOX2P48431 317 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 Q5BKY6 102 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 STPG1Q5TH74 334 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 DPY19L4Q7Z388 723 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 CDC20BQ86Y33 519 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 SDR16C5Q8N3Y7 309 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 OR1N1Q8NGS0 311 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 GCDHQ92947 438 aaPredicted RBP18.18■□□□□ 0.5
VPS53-201ENST00000291074 TMEM246Q9BRR3 403 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 AUNIPQ9H7T9 357 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 FKRPQ9H9S5 495 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 TAS2R5Q9NYW4 299 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 MOKQ9UQ07 419 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 PCDHGA9Q9Y5G4 932 aaKnown RBP18.18■□□□□ 0.5
VPS53-201ENST00000291074 ALG1L2C9J202 215 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 PRKCAP17252 672 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 DCAF7P61962 342 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 RRAS2P62070 204 aaPredicted RBP18.18■□□□□ 0.5
VPS53-201ENST00000291074 DMWDQ09019 674 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 BCL2L15Q5TBC7 163 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 SLC29A4Q7RTT9 530 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 FAM220AQ7Z4H9 259 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 SIAH3Q8IW03 269 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 CMTM4Q8IZR5 234 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 ZNF501Q96CX3 271 aaPredicted RBP18.18■□□□□ 0.5
VPS53-201ENST00000291074 FRRS1LQ9P0K9 344 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 CFAP54Q96N23 3096 aa18.18■□□□□ 0.5
VPS53-201ENST00000291074 FAM172BPA6NC97 362 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 ABHD16AO95870 558 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 YES1P07947 543 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 EVI2BP34910 448 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 EFR3AQ14156 821 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 YIF1BQ5BJH7 314 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 LRRC69Q6ZNQ3 347 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 PRR23CQ6ZRP0 262 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 KANSL1Q7Z3B3 1105 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 OR2T4Q8NH00 348 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms